Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1548 ATGGCGACGCCTTTAACGGGACTACAGCACTTGGACGGAGGTGGAGTGGCGGTGCTGTCCAATTCTGTGAACCAGGTCGATTCTTCCTCCTCCACATCCAATGGTAGCTTGAAGTGCTCCAAATTGGAGTCGCCAATCTTTATTTTCTTGTTCTTTCACAAAGCGATTCGGAATGAGCTTGATGCTCTTCACCGATTGGCTATGGCATTTGCTACGGGAAATTGTTCTGATATTCAGCCCCTGTCCGAACGCTACCATTTCCTGAGATCAATTTACAGGCACCACTCCAATGCCGAAGATGAGGTGATATTTCCAGCTCTTGATATACGTGTGAAAAATGTAGCACAGACATATTCTCTCGAACATAAGGGTGAAAGCAATCTTTTTGATCATCTATTTGAGCTCTTAAATTCTACCGTCCAGAATGATGAAAGTTTCCCAAGGGAGTTAGCATCCTGTGCGGGAGCTCTGCAGACGTCAGTTAGTCAACACTTGGCTAAGGAAGAGGAGCAGGTGTTTCCACTGCTTATTGAGAAGTTCTCTCTTGAGGAACAGGCTTCCTTAGTTTGGCAATTTCTTTGCAGTATTCCTGTGAATATGATGGCAGAATTTCTTCCATGGCTTTCAACATCTATATCTCCAGATGAATATCAGGATTTGCAGAAGTTCTTAAGCAAGATAGTGCCAGAGGAAAAACTTCTTCAAAAGGTTATTTTCACTTGGATGGAAGGGAGAAGTGGTGCTAACACAGTTGAAAGTTGTGTAGATCATTCTCAGGTTCGAAATTGTCGTTGCCCATTAACCCATCAGATTGAGAAAGTAAACTGTGCATGTGAGTCGACAACAACTGGAAAAAGGAAATATTCTGAGTCGAGTCTAGATGTTTTTGATACCACGGGAACGCATCCTATAGATGAAATATTGCTATGGCATAATGCAATAAAACAAGAGTTAAGTGAGATAGCTGTGGAGACCAGAAAGATACAGCTCTCTGGAGATTTCACTAATCTATCAGCTTTTAATGAAAGATTGCAATTTATTGCGGAAGTTTGCATATTTCACAGTATTGCCGAGGACAAGGTTATATTTCCGGCTGTCGATGGTGAAATTTCTTTCTTTCAAGAGCATGCCGAAGAAGAAAACCAATTTAATGAATTTCGCTGTTTGATTGAAGCTATTCAAAATGAAGGAGCGACATCTAATTCGGAAGCTGAGTTTTATTCCAAGTTATGCTCACATGCTGATCATATAATGGAAACTATACAGGGGCATTTCCATAACGAAGAAATTCAAGTTCTTCCACTTGCTCGGAAGCACTTTAGCTTCAAAAGACAACGTGAACTTCTGTATCAAAGTTTGTGCACAATGCCTCTGAAATTGATTGAACGCGTCCTCCCATGGTTGGTAGGATCATTAACTGAAGATGAAGTGAAGATGTTTTTAAAAAACATGCAGCTGGCAGCTCCAGCAACAGATTCTGCTCTAGTCACACTCTTCTGTGGTTGGGCTTGTAAGGCTCGTAATGAGGGTCTGTGTTTGTCTTCAAGTGCATCAGGTTTCTGTCCTGCTCAAAGACTTAATGATATTGAAGAAAATTTTGTCCAGTCATCCTGTCCTTCTGCATTATCTTCTGGAGACTGCTCAGTATTAGTTCAATTTGATGAGAACAAAAGACCAGTCAAGAGAAACATATTGGAGTTGTGCAAAAATAGAGATGTCCCTGAAATTTCAGAGACTGAAAGTATTCAGAAACAGTGTTGTAGTGCTCGGTCTTGTTGTGTGCCAGGTTTAGGAGTAAACAGTAATAATCTGGGGCTGATTTCTCTTTCTACTGCCAAGTCTTTACGCTCCTTGTCTTTCAACTCCTCTGCCCCATCTCTGAATTCCAGTCTTTTTATATGGGAAACAGATAACAACTCATGTGATGTTAATTCTGCAGAAAGACCAATTGATACTATTTTTAAATTCCATAAAGCTATACGCAAAGACTTGGAGTATTTAGATGTTGAGTCTGGAAAACTTAGTGACGGTGATGAGACAATTCTTCGGCAGTTTAGTGGAAGATTTCGTCTTTTGTGGGGTTTATATAGAGCTCACAGTAATGCTGAAGATGATATAGTATTTCCAGCACTGGAATCCAAGGAGTCACTTCATAATGTGAGTCATTCATACATGCTGGACCATAAGCAGGAAGAAAAATTATTTGAAGATATTTCCTGTGTTCTTTCTGAGCTTTCTGCCCTTCATGAAGACTTGCAGATGAGCAATATGTCAAATGAAAGTAATATTGAAACTTCTGATGCCAATTTTAGAGATAATATCAGAAAGTACAATGAGCTAGCCACTAAACTTCAAGGGATGTGCAAATCCATAAGAGTGACCCTGGATCAGCATATTTTCAGGGAAGAGCGTGAGCTCTGGCCGTTGTTTGGGAGACATTTCTCTGTGGAGGAACAAGATAAGATAGTGGGCCGAATAATTGGAACTACAGGTGCTGAAGTTCTCCAATCAATGTTACCATGGGTGACTTCTGCACTTACTCAGGATGAACAGAACAAAATGATGGACACATGGAAGCAGGCAACTAAGAACACTATGTTCAATGAATGGCTTAATGAATGCTGGAAAGAAAGCTCAGCACCTCTATCAAAGACAGAAACAGCAGCGCAAACCGCGTCTCAAAGAGGTGCTGAATATCAAGAAAGCTTGGACCTGAATGATCAGATGTTTAGACCGGGTTGGAAAGACATATTCCGGATGAATCAGAGTGAACTTGAGTCAGAGATTCGGAAGGTTTATCGGGACTCAACACTTGATCCAAGGAGAAAGGCTTACCTTGTGCAGAATCTAATGACTAGTCGCTGGATAGCTGCCCAGCAGAAGTTACCTAAATCTATAGCTGGGGAGTCTTCTAATGGCGAAGAAATAGAAGGACGCTTTCCATCATTCCAGGACCCGGAGAAACAAGTATTTGGGTGTGAACACTATAAGAGAAACTGCAAACTTCGAGCTGCATGTTGTGGCAAGTTGTTTACATGTAGATTTTGCCATGACAATGTGAGCGATCACTCAATGGATAGAAAAGCAACATCAGAAATGATGTGTATGCGCTGCCTGAATATTCAGGCAGTTGGGCCTATATGCATGACACCTTCATGTAATGGACTTTTAATGGCAAAATACTATTGCAATATATGCAAATTTTTTGATGATGAAAGGAATGTTTATCACTGCCCATTTTGCAATTTATGCCGTGTGGGGAGAGGACTTGGGATTGATTATTTTCATTGTATGAAATGCAACTGCTGTCTGGGGATAAAATCAACATCTCACAAGTGCCTGGAGAAAGGCTTAGAAATGAATTGCCCAATTTGCTGTGACTTCTTATTCACATCAAGTGCTACAGTCAGAGCTCTACCATGTGGCCATTACATGCATTCAGCTTGCTTTCAGGCATATACATGTAGTCATTACACATGTCCAATCTGCAGCAAGTCATTGGGAGATATGGCGGTTTACTTTGGTATGCTTGATGCTTTATTGGCTGCTGAGGAACTTCCTGAAGAGTACAGGGACCGTTATCAGGACATACTCTGCAATGACTGTGATCGAAAGGGCACTTCACGCTTCCACTGGTTATATCACAAATGCGGATTTTGTGGGTCATACAATACCCGAGTGATCAAGTGCGAGGCATCAAATTCCCGCTGCTCTTAG 3717 0.4124 MATPLTGLQHLDGGGVAVLSNSVNQVDSSSSTSNGSLKCSKLESPIFIFLFFHKAIRNELDALHRLAMAFATGNCSDIQPLSERYHFLRSIYRHHSNAEDEVIFPALDIRVKNVAQTYSLEHKGESNLFDHLFELLNSTVQNDESFPRELASCAGALQTSVSQHLAKEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMAEFLPWLSTSISPDEYQDLQKFLSKIVPEEKLLQKVIFTWMEGRSGANTVESCVDHSQVRNCRCPLTHQIEKVNCACESTTTGKRKYSESSLDVFDTTGTHPIDEILLWHNAIKQELSEIAVETRKIQLSGDFTNLSAFNERLQFIAEVCIFHSIAEDKVIFPAVDGEISFFQEHAEEENQFNEFRCLIEAIQNEGATSNSEAEFYSKLCSHADHIMETIQGHFHNEEIQVLPLARKHFSFKRQRELLYQSLCTMPLKLIERVLPWLVGSLTEDEVKMFLKNMQLAAPATDSALVTLFCGWACKARNEGLCLSSSASGFCPAQRLNDIEENFVQSSCPSALSSGDCSVLVQFDENKRPVKRNILELCKNRDVPEISETESIQKQCCSARSCCVPGLGVNSNNLGLISLSTAKSLRSLSFNSSAPSLNSSLFIWETDNNSCDVNSAERPIDTIFKFHKAIRKDLEYLDVESGKLSDGDETILRQFSGRFRLLWGLYRAHSNAEDDIVFPALESKESLHNVSHSYMLDHKQEEKLFEDISCVLSELSALHEDLQMSNMSNESNIETSDANFRDNIRKYNELATKLQGMCKSIRVTLDQHIFREERELWPLFGRHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTMFNEWLNECWKESSAPLSKTETAAQTASQRGAEYQESLDLNDQMFRPGWKDIFRMNQSELESEIRKVYRDSTLDPRRKAYLVQNLMTSRWIAAQQKLPKSIAGESSNGEEIEGRFPSFQDPEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMRCLNIQAVGPICMTPSCNGLLMAKYYCNICKFFDDERNVYHCPFCNLCRVGRGLGIDYFHCMKCNCCLGIKSTSHKCLEKGLEMNCPICCDFLFTSSATVRALPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRYQDILCNDCDRKGTSRFHWLYHKCGFCGSYNTRVIKCEASNSRCS 1238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1548 1238 CDD Hr-like 305 434 - -
Glsi12g1548 1238 Gene3D nmb1532 protein domain like 43 194 - -
Glsi12g1548 1238 Gene3D nmb1532 protein domain like 305 452 - -
Glsi12g1548 1238 Pfam Hemerythrin HHE cation binding domain 48 176 IPR012312 -
Glsi12g1548 1238 Pfam Hemerythrin HHE cation binding domain 302 436 IPR012312 -
Glsi12g1548 1238 Pfam Hemerythrin HHE cation binding domain 649 809 IPR012312 -
Glsi12g1548 1238 FunFam Zinc finger protein-related isoform 1 1117 1166 - -
Glsi12g1548 1238 CDD RING-H2_Pirh2-like 1121 1164 - -
Glsi12g1548 1238 ProSiteProfiles Zinc finger CTCHY-type profile. 1058 1121 IPR017921 -
Glsi12g1548 1238 FunFam Zinc finger protein BRUTUS 644 873 - -
Glsi12g1548 1238 Pfam Zinc-ribbon 1169 1226 IPR039512 -
Glsi12g1548 1238 Gene3D - 1193 1234 - -
Glsi12g1548 1238 ProSiteProfiles Zinc finger CHY-type profile. 986 1055 IPR008913 GO:0008270
Glsi12g1548 1238 SMART ring_2 1122 1163 IPR001841 -
Glsi12g1548 1238 SUPERFAMILY CHY zinc finger-like 985 1049 IPR037274 GO:0008270
Glsi12g1548 1238 CDD Hr-like 651 808 - -
Glsi12g1548 1238 ProSiteProfiles Zinc finger RING-type profile. 1122 1164 IPR001841 -
Glsi12g1548 1238 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 692 1234 - -
Glsi12g1548 1238 Pfam CHY zinc finger 993 1068 IPR008913 GO:0008270
Glsi12g1548 1238 Gene3D nmb1532 protein domain like 644 894 - -
Glsi12g1548 1238 CDD Hr-like 48 174 - -
Glsi12g1548 1238 Pfam Ring finger domain 1121 1163 IPR001841 -
Glsi12g1548 1238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1118 1166 IPR013083 -
Glsi12g1548 1238 Coils Coil 376 396 - -
Glsi12g1548 1238 SUPERFAMILY Zinc hairpin stack 1059 1115 IPR037275 -
Glsi12g1548 1238 SUPERFAMILY RING/U-box 1119 1174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1548 Glsi-ChrGlsi12 32410218 32423336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1548 1 1238 C2H2 Transcription Factor Family AT3G18290 68.149 0.0 1713