Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1540 ATGGAAGCCCATATCTTTTTCCTTTCTTCCATCCTCACCATCTCCTTCTTCCTAACCACTTTACCTAAATCCCTGTGTCAACCAGATCAATACCTGGCCTGCCAACCCTCATTCAATTGTGGAAAAGTGGAAAATATCTCCTACCCTTTCTGGTCAGAAAACCTACAACCCCCTCATTGTGGCAGTCGCGGGTTCCAGCTCAGTTGTCGGGAAGATCATTTCCCTTCCATTTGGGTCGGCTCACAGACTTTCGAAGTTCTACACATTTACCCATTAACTTCTTACAACATGACAATAAGGCGAACAGGCCTTGTCTATGATAATTGTTCTTCGTCTTTCACCAGCACTTCCTTAAATACCCAAGACGATCTCTTCCGTTATGGGTCAAATGTTAAGAATATTACCCTATTATACGACTGCCCCTCAGAGATTTGGATTGGCCGAAATAACTTCTCATGCCAAACTCAGGCCAATAAACTTGTTTACTACGTGGCCGATGATGATCCGCTGCTGCCATCGCCTGACTTTCACAAATGTGGGTATCGGGTAAACGTGCCGATTTCACGGGATTTTACTCCGGAGCCTGAAGATGGTCTTGAAGAACTGATGAGAGCTTTGGATACTGGTTTTGATGTGATTTATGCTGTAGACGGGGAGATTAGCTGCATAAAATGCGAGAAATCTGGAGGAAGATGTGGGCGTAATGGAACAGATGATAATTCTCATTTTATCTGTTATTGCCGGGATGGAGCTTATCCTACAGACTGTCCTGATTCCACTTCGAGTAAGAGATATCCTGTTCCATGCTCTGACCCCTCTTTGCTTTCTCTGGTTATTGTTGCAGAAAAATGGCATAGGAAATTCATTGTAGCTGTCGTAAGCGGAACAGGAGCACTACTGATGTGTATGATGTGTGTGCCTATTTACTGTCGCATAATCAAGTCATTAATAAAGAAGAAAATAGAACTTTGGAAGACAACTAAGGTTGACAAAGATATTGAGGCTTTCATTAGAAACTATGGACCTCTGTCTCTCACAAGATATAAATTCCCGGATGTCAAGAAAATGACCAAATCCTTCAAAGTTAAATTGGGACAAGGTGGTTATGGTGTTGTATATAAAGGAGAGCTACTCAGTGGCTGCCCTGTGGCTGTGAAGATATTGACTGCATCCAAAGGGAGCGGCGAAGAGTTTATCAATGAGGTTGCCAGTATCAGCAGAACTTCCCATGTTCATGTTGTCACCCTTCTTGGATTTTGTTTAGAAAGCCGGAAAAAAGCTCTCATCTATGAATTTATGCCCAATGGATCCCTTGAAAAGTTCATATACAACAAGGCAGATGAAACTGCTCTATCCTTGACGAGTGAAAAATTACACGAAATTGCAATTGGGATAGGTCGAGGACTTGAGTACTTGCATAAGGGATGCAACACTCGAATTCTACATTTTGACATAAAACCGCACAACATCCTTTTGGATGAAAATTTTTGCCCCAAGATCTCAGATTTTGGGCTTGCTAAGCTTTGCCCCAAGAAAGAAAGCATCATTTCGCTTTCAGAGGCCAGAGGGACAATAGGATATCTTGCTCCAGAAGTTTGGAATAAAAATATTGGAGGAGTTTCACATAAGTCTGATGTTTATAGCTATGGAATGATGCTGCTAGACATGGTTGGAGGGCGAAACAACATGAATGTCGAAGCCAGTGACTCAAGTGAGATATATTTTCCGGATTGGATTTATAATAAACTTGAGAAGGGCCGTGATGGGGCGATCACCACAGAGGAACATGATATTGCAAAGAGAATGACAATGGTGGCATTGTGGTGCATTCAAACATTTCCAACTCACAGACCTACAATCAGTAGAGTGATCGAAATGTTAGAAGGAAGCTTAGATTCGCTGGAAATGCCGCCAAAGCCTGTCATGTCTTCTCCTACAAGATCAGCAGCGGAATCTTCCACTACCTCATTTCTGTCAACGTGA 1983 0.4246 MEAHIFFLSSILTISFFLTTLPKSLCQPDQYLACQPSFNCGKVENISYPFWSENLQPPHCGSRGFQLSCREDHFPSIWVGSQTFEVLHIYPLTSYNMTIRRTGLVYDNCSSSFTSTSLNTQDDLFRYGSNVKNITLLYDCPSEIWIGRNNFSCQTQANKLVYYVADDDPLLPSPDFHKCGYRVNVPISRDFTPEPEDGLEELMRALDTGFDVIYAVDGEISCIKCEKSGGRCGRNGTDDNSHFICYCRDGAYPTDCPDSTSSKRYPVPCSDPSLLSLVIVAEKWHRKFIVAVVSGTGALLMCMMCVPIYCRIIKSLIKKKIELWKTTKVDKDIEAFIRNYGPLSLTRYKFPDVKKMTKSFKVKLGQGGYGVVYKGELLSGCPVAVKILTASKGSGEEFINEVASISRTSHVHVVTLLGFCLESRKKALIYEFMPNGSLEKFIYNKADETALSLTSEKLHEIAIGIGRGLEYLHKGCNTRILHFDIKPHNILLDENFCPKISDFGLAKLCPKKESIISLSEARGTIGYLAPEVWNKNIGGVSHKSDVYSYGMMLLDMVGGRNNMNVEASDSSEIYFPDWIYNKLEKGRDGAITTEEHDIAKRMTMVALWCIQTFPTHRPTISRVIEMLEGSLDSLEMPPKPVMSSPTRSAAESSTTSFLST 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1540 660 Pfam Protein kinase domain 361 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1540 660 PANTHER RUST RESISTANCE KINASE LR10-RELATED 330 647 IPR045874 GO:0004672
Glsi12g1540 660 Pfam Wall-associated receptor kinase C-terminal 173 250 IPR032872 -
Glsi12g1540 660 Gene3D Transferase(Phosphotransferase) domain 1 433 643 - -
Glsi12g1540 660 Pfam Wall-associated receptor kinase galacturonan-binding 34 91 IPR025287 GO:0030247
Glsi12g1540 660 SMART serkin_6 358 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1540 660 MobiDBLite consensus disorder prediction 645 660 - -
Glsi12g1540 660 SUPERFAMILY Protein kinase-like (PK-like) 341 628 IPR011009 -
Glsi12g1540 660 Gene3D Phosphorylase Kinase; domain 1 335 432 - -
Glsi12g1540 660 ProSitePatterns Protein kinases ATP-binding region signature. 364 386 IPR017441 GO:0005524
Glsi12g1540 660 FunFam PR5-like receptor kinase 433 639 - -
Glsi12g1540 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 480 492 IPR008271 GO:0004672|GO:0006468
Glsi12g1540 660 MobiDBLite consensus disorder prediction 635 660 - -
Glsi12g1540 660 ProSiteProfiles Protein kinase domain profile. 358 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1540 Glsi-ChrGlsi12 32342071 32345903 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1540 16 656 Receptor kinase-like Gene Family AT1G66910 39.403 2.93e-141 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Glsi12g1540 Pkinase 4.8e-45 CL0016