Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1539 ATGATCCTCCAAATCTCCTTCCATTACATTAAACCTCTTGAAATATACATTAATTTCATCATCTTCCTATCCTTGGCTAATCTTACTTTTCCTGTCAATCCAAAATTTGAGGCCTGTGCACCTCAAAGTTGTGGGCATGGCCCAATTATAAAGTACCCTTTCTGGATTCCTCATAAACAAGAATCATTCTGTGGCCGTCCTCACTTTGAGATTAGCTGCAATGAAAATAATCCAATCCTCAGAATATCTAATCATGATTTTGTAGTTAAACACATCTCTACCTCTTCTTTTGTTGTGGCCAACATTGCTGCGTATGAGGAAAAGTGCCCTGCTCCCATGTACAATTACAGCTTTGTTCAAACTCCATTTATCTACAGTTCTGAAAATTCCAACATGTCTTACTTCTACAATTGTACCACAGAACCTATAGACTACCCAACTTACAAAGTAGGCTGCGCTAAAGATGCTACCCATCATTCTTTTGCGGTTTTTCATAAGGAGGCGCTAGAGCATAAAAACTTCTCCTTCAATAAGTGCCAGTTCATGATTAATGTGCCAGTGTACGTGAATGGTATTGCTAATTTCACTAGCTTATTGCAAATGAATTACACTGAAATTTTGAAGATGGGGTTTATTTTGAAATGGGCTGCACCTGATTGCCAGCACTGCGAGCTAAGTGGTGGACGCTGCGGATTTGATAATTATAAATTCCACTGCTTCTGCAAGGATAAACCTCATCTCAAAAGTTGTGGTGATGAAGCTTATTACCATTCTGCTTGGAACCCAGTTGTTGCTGCTGTTTTAATAAGTGTGGTAGTTATGAGCATTGCCTTTTTCTTTTATCGGCGCCGACAGAAGAACAGTTATGCAAAATCATATATACAATCACGGGCCACCTCTTCTGATTCCTCTCTAATGGACCCTGAGAAGGGTAGTAAATATTTTGGAGTCCACCTCTTCACATATACTGAACTTGAAGAGGCCACTAACTATTTTGATTCTTCCAAAGAACTTGGAGATGGAGGTTTTGGCACGGTGTATTTCGGCAAACTTCGGGATGGGCGTTGTGTTGCAGTGAAGCGTTTGTACGAGAACAATTACAAGAGAGTTGAGCAATTCATGAACGAAGTTGAGATCTTGACTCGTTTACGCCACCAAAATCTTGTGTCTCTCTATGGCTGCACTTCCCGGCACAGCCGTGAACTTCTGCTTGTTTATGAATACATTTCTAATGGAACTGTAGCCGATCATCTTCATGGTGAACGAGCGGAACCTGGCTCACTCCCCTGGCATATCAGGATAAAGATTGCCATAGAGACTGCAAATGCATTGGCATATCTTCATGCTTCTGACATCATCCACCGAGATGTTAAAACCAACAATATTCTTCTTGACGACCACTTTTGCGTCAAAGTAGCGGATTTTGGACTCTCGCGTCTGTTCCCAAATGATGTCACCCACATTTCAACAGCACCACAAGGGACTCCTGGTTATGTTGATCCAGAGTACCATGAGTGCTACCAGCTCACTGACAAAAGTGATGTCTATAGCTTTGGAGTGGTGCTAATTGAGCTCATCTCCTCCATGCCTGCTGTTGATATCACAAGGCATCGGCATGAAATCAATTTGTCTACCATGGCCATTAACAAGATCCAAAATCGGGCCCTACATGAGCTTGTGGACCCAACTCTTGGGTTTGAATCAGACTACAAGGTAAGGAAAATGATAAATGCGGTGGCAGAGTTGGCATTTCAGTGCCTGCAGAGTTTGAAAGATATGAGACCTTCTATGGAAGAAGTGCTGGATACGCTGAGGGATATAGAGAGTGATGGGAAACATAAGAGCAAACCAGAGGTGATGGATATTTCCGCAGATGATGTTGTGTTGCTGAAGAATGACCTACCTCCATCACCGGATTCGAATTTGGCAAGCAAATCTACCACGCCAAATGATAGCAAATAA 1962 0.4205 MILQISFHYIKPLEIYINFIIFLSLANLTFPVNPKFEACAPQSCGHGPIIKYPFWIPHKQESFCGRPHFEISCNENNPILRISNHDFVVKHISTSSFVVANIAAYEEKCPAPMYNYSFVQTPFIYSSENSNMSYFYNCTTEPIDYPTYKVGCAKDATHHSFAVFHKEALEHKNFSFNKCQFMINVPVYVNGIANFTSLLQMNYTEILKMGFILKWAAPDCQHCELSGGRCGFDNYKFHCFCKDKPHLKSCGDEAYYHSAWNPVVAAVLISVVVMSIAFFFYRRRQKNSYAKSYIQSRATSSDSSLMDPEKGSKYFGVHLFTYTELEEATNYFDSSKELGDGGFGTVYFGKLRDGRCVAVKRLYENNYKRVEQFMNEVEILTRLRHQNLVSLYGCTSRHSRELLLVYEYISNGTVADHLHGERAEPGSLPWHIRIKIAIETANALAYLHASDIIHRDVKTNNILLDDHFCVKVADFGLSRLFPNDVTHISTAPQGTPGYVDPEYHECYQLTDKSDVYSFGVVLIELISSMPAVDITRHRHEINLSTMAINKIQNRALHELVDPTLGFESDYKVRKMINAVAELAFQCLQSLKDMRPSMEEVLDTLRDIESDGKHKSKPEVMDISADDVVLLKNDLPPSPDSNLASKSTTPNDSK 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1539 653 MobiDBLite consensus disorder prediction 630 653 - -
Glsi12g1539 653 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 19 650 IPR044652 GO:0004672
Glsi12g1539 653 Pfam Protein kinase domain 333 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1539 653 FunFam Wall-associated receptor kinase-like 20 409 617 - -
Glsi12g1539 653 Gene3D Phosphorylase Kinase; domain 1 305 408 - -
Glsi12g1539 653 Pfam Wall-associated receptor kinase C-terminal 158 244 IPR032872 -
Glsi12g1539 653 Pfam Wall-associated receptor kinase galacturonan-binding 39 98 IPR025287 GO:0030247
Glsi12g1539 653 Gene3D Transferase(Phosphotransferase) domain 1 409 620 - -
Glsi12g1539 653 MobiDBLite consensus disorder prediction 637 653 - -
Glsi12g1539 653 ProSitePatterns Protein kinases ATP-binding region signature. 338 360 IPR017441 GO:0005524
Glsi12g1539 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 452 464 IPR008271 GO:0004672|GO:0006468
Glsi12g1539 653 SMART serkin_6 332 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1539 653 ProSiteProfiles Protein kinase domain profile. 332 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1539 653 FunFam WAK1-OsWAK receptor-like cytoplasmic kinase (OsWAK-RLCK) 305 408 - -
Glsi12g1539 653 SUPERFAMILY Protein kinase-like (PK-like) 314 604 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1539 Glsi-ChrGlsi12 32336743 32339151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1539 219 652 Receptor kinase-like Gene Family AT1G25390 54.248 7.18e-154 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Glsi12g1539 Pkinase 5.1e-48 CL0016