Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1529 ATGCCTGTCGTTACTGAGGCTTCTGCAATTGCAGAACACATAAAATGTAGAAGACCCAGAAACCAATTCAGCCATCCCATTCCAGAAGCAGATCCAAACCCGCCAATCCCTTCTATAATCCAATCCACTCGCTGCAAATCCACCATTTCCTCTCTTCTCCTCTCTACTTTTTCTAACAACACGTCAAATGAAACTATACAGGCCAGCATCAACGGCACCGGCCATACCAAGAAAAAGAACAACTTCTCGGCGGCAACCTTCAGAGGATTCGGATGCACTGCTGGTGCGTCGCAGCAGGTGTCGGTTCCGGCGGTGATTCGGACATCAGCGGATTGGCAAGGGAAGAAGGCCAGAAAGAAGAAGCACAAAAGGAATACAACGAAGAACAGTAGCAGCAACAGGACCTGTCCTGGCGTTCTTGATGGTTCTAGTTCTGGTTCTGCTAATTGTGTTGATTTTCAAGACGTTTGGTGTGGCCCCGGAATCGGGTTTTCAGCGGATGCTGCTGCCTCGGTCGATTGCGTTGTGGCGAGGAAAAATGTGTCTGCAAGAGGGAAGATTGATCTGGAGAGGATAACCCACAGGGAGCGTCTATCTTATCTAGGAAGGCGAACTGTAAACCCAGAAACAATCTCCTTTCTGAATAGTGATCCCGACATCTTCCCAACATGCCCTGCCTCAGACTCCTTTGGAACTGCTAGATACTATCGTCATGTTCGACATCCTTCCTCTGAAGGTCTTGCTGAGATAATGATGCTTCAAGGAGGTCTGCTAATGGGGGGAATATTAGATTCACACGATCAATTTAGAGACTGGAGACTTGATGTCGATAACATGTCATATGAGCAACTGCTTGAGCTTGCTGAGAGAATTGGTTATGTGAACACTGGACTTAGAGAAGATGAGATAGGACGCCACATAAGGAAAATTCAACTTCCAATTTTAAATGACACATTGAAGCATCAAGCTCACAAAAAGTGCAGCATTTGTCAGGAGGACTATGAAACAGATGATGAGGTGGGGAAGCTAAATTGTGAACACAGCTATCACTTTGAGTGTATCAGACAATGGCTTGCACAGAAAAACTTCTGTCCAGTCTGTAAGCAAGAAGTTGTGGTTCGTCACTGA 1128 0.461 MPVVTEASAIAEHIKCRRPRNQFSHPIPEADPNPPIPSIIQSTRCKSTISSLLLSTFSNNTSNETIQASINGTGHTKKKNNFSAATFRGFGCTAGASQQVSVPAVIRTSADWQGKKARKKKHKRNTTKNSSSNRTCPGVLDGSSSGSANCVDFQDVWCGPGIGFSADAAASVDCVVARKNVSARGKIDLERITHRERLSYLGRRTVNPETISFLNSDPDIFPTCPASDSFGTARYYRHVRHPSSEGLAEIMMLQGGLLMGGILDSHDQFRDWRLDVDNMSYEQLLELAERIGYVNTGLREDEIGRHIRKIQLPILNDTLKHQAHKKCSICQEDYETDDEVGKLNCEHSYHFECIRQWLAQKNFCPVCKQEVVVRH 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1529 375 FunFam E3 ubiquitin-protein ligase rnf12-A 294 373 - -
Glsi12g1529 375 SMART ring_2 327 367 IPR001841 -
Glsi12g1529 375 MobiDBLite consensus disorder prediction 114 128 - -
Glsi12g1529 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 374 IPR013083 -
Glsi12g1529 375 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 85 371 IPR045191 GO:0061630
Glsi12g1529 375 ProSiteProfiles Zinc finger RING-type profile. 327 368 IPR001841 -
Glsi12g1529 375 Pfam Ring finger domain 326 368 IPR001841 -
Glsi12g1529 375 SUPERFAMILY RING/U-box 326 373 - -
Glsi12g1529 375 MobiDBLite consensus disorder prediction 111 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1529 Glsi-ChrGlsi12 32280542 32284033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1529 1 282 C3H Transcription Factor Family AT1G73760 41.914 1.26e-56 185