Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1516 ATGAATGAAAGCACCCAGTCTCAGTCTGCCAGTGGAAACGGGAATGTAAACGTTGAGCCTCGGGACTCAGATTCAAACCCTAGCCCCAAGCGGCGTGCTGATTCAGGAACTCTTGATCCGACGGCGAAGAAGTCGAGAACTGAAGTTCCGACGGCGGCTGATACAGAAGTTGTTTCAGGCCAACAGAATGTAAAGGAAGTAGTTTTTGAGATTGAGGCGGATGCAGCTGAGGATAAGGGGTCTAGGCATACCATGGAGGATGCCTGGGTGGTACTTTTGGACGCGAGTTTAGATTGCCCGGGAAAATTGAGATGTGCACACTTTGCAATTTATGATGGACATGGAGGCCGGTTAGCTGCAGAATATGCTCAAATGCATTTGCATGGAAATGTTCTTTCAGCAGGATTACCACGTGAGTTGTTGGATGTAAAGGCAGCTAAAAGAGCAATACTTGAAGGTTTCCGCAGAACTGATGAGTCACTTCTTCAAGAAAGTTCTGCAGGGGGATGGCAGGATGGTGCTACAGCTGTATGTGTTTGGGTATTGGGACAAAAAGTTTTTGTTGCAAATGTAGGGGATGCCAAGGCTGTTTTAGCTCGGTCATCTATAATTGATGGATCCCAAAATCACTCAGATGGAGACCATGCACTGAAAGCTATTGTTTTAACCAGGGAACACAAGGCCATCTACCCACAGGAGCGTGTTCGCATTCAGAAGGCTGGCGGTGTAGTGAGCTCAAATGGACGACTACAAGGGCGTCTAGAAGTTTCTAGGGCTTTTGGAGATCGCCAGTTCAAAAAGGTGGGTGTTGTTGCAACCCCAGATATTCATTCTTTTGACCTTACTGACCGAGAGCATTTTATCATCCTTGGCTGTGATGGCCTGTGGGGTGTGTTTGGTCCTAGTGATGCTGTTGATTTTGTTCAGAAACTATTGAATGAGGGGTTGCCTGTCACAGCTGTGAGCCGCCGACTTGTAAGAGAAGCTGTTCGAGAGCGGCGCTGTAAAGATAATTGCACTGCAATTGTTATTGTATTCAAGCACAAGTAA 1050 0.4695 MNESTQSQSASGNGNVNVEPRDSDSNPSPKRRADSGTLDPTAKKSRTEVPTAADTEVVSGQQNVKEVVFEIEADAAEDKGSRHTMEDAWVVLLDASLDCPGKLRCAHFAIYDGHGGRLAAEYAQMHLHGNVLSAGLPRELLDVKAAKRAILEGFRRTDESLLQESSAGGWQDGATAVCVWVLGQKVFVANVGDAKAVLARSSIIDGSQNHSDGDHALKAIVLTREHKAIYPQERVRIQKAGGVVSSNGRLQGRLEVSRAFGDRQFKKVGVVATPDIHSFDLTDREHFIILGCDGLWGVFGPSDAVDFVQKLLNEGLPVTAVSRRLVREAVRERRCKDNCTAIVIVFKHK 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1516 349 CDD PP2Cc 76 346 IPR001932 -
Glsi12g1516 349 PANTHER PROTEIN PHOSPHATASE 2C 40 344 IPR015655 GO:0004722|GO:0006470
Glsi12g1516 349 MobiDBLite consensus disorder prediction 1 58 - -
Glsi12g1516 349 FunFam Probable protein phosphatase 2C 67 60 348 - -
Glsi12g1516 349 Pfam Protein phosphatase 2C 76 334 IPR001932 -
Glsi12g1516 349 Gene3D - 55 348 IPR036457 -
Glsi12g1516 349 SMART PP2C_4 68 344 IPR001932 -
Glsi12g1516 349 MobiDBLite consensus disorder prediction 1 23 - -
Glsi12g1516 349 ProSiteProfiles PPM-type phosphatase domain profile. 72 346 IPR001932 -
Glsi12g1516 349 SUPERFAMILY PP2C-like 69 347 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1516 Glsi-ChrGlsi12 32154038 32160859 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1516 69 298 PP2C-type Phosphatase Gene Family AT1G18030 80.000 9.18e-137 389