Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1506 ATGTCAGACTTCGATCTGCCCAAGAAAGTAGCCGATAGATATCTCAAGCGTGAAATCCTTGGTGAAGGTACCTATGGAGTCGTATACAAAGCCATTGATACCAAGACAGGACAGACAGTTGCGATTAAAAAAATCCGGCTTGGCAAGCAGAAGGAAGGAATAAATTTTACGGCTCTTAGAGAGATTAAACTACTTAAAGAGCTCAAAGATCCAAACATTATTGAGCTAATTGATGCATTTCCGCATAAAGAGAATTTGCATCTTGTGTTTGAATTCATGGAGACGGACCTTGAAGCTGTTATACGAGACCGAAATATTTTTCTTTCGCCAGCTGATATAAAATCTTACCTTCAAATGACACTTAAAGGTCTTGCTCATTGCCACAAGAAATGGGTTTTGCATAGGGATATGAAGCCAAACAACTTGTTGATAGGGCCTAATGGACAGCTGAAACTTGCAGATTTTGGTTTAGCAAGGATATTTGGGAGCCCAGATCGAAGGTTTACTCATCAGGTGTTTGCTCGGTGGTATAGAGCACCTGAGCTATTATTTGGGACCAAACAATATGGTTCAGGGGTAGATGTTTGGGCTGCAGCTTGTATATTTGCTGAACTTCTTCTTCGTCGACCCTTTTTGCAGGGTTCAAGTGATATTGATCAACTAGGAAAGATTTTTGCAGCACTTGGGACTCCAACATCTTCTCAGTGGCCTGATATGGTATACCTTCCTGATTATGTTGAATACCAATATGTTCCAGCTCCTCCTTTGCGTTCTTTATTTCCAATGGCAAGTGATGATGCTTTAGATCTGTTGTCAAAGATGCTTACATATGATCCAAAAGTTAGAATTTCAGTGCAGCAGGCATTAGAGCACAGGTACTTTTCCTCTGTGCCTCTGCCCACAGATCCTGATAAGCTCCCTAGACCTGCCCCTAAGAGGGAATCTAAGGTTTCTGATTTCAATCCCCATGAGGGTCCCACTGTGTTATCACCTCCAAGAAAGTCTAGGAGAGTGATGCCAGGGCGTGATGGATTTGAAGACAATGTTGGTGATTACAGACAGATGGTTGGTGATAATACAGGCAAGAATGATCCAGCACCAATGTCACTAGATTTTTCTATATTTGGATTAAAACCTCCAAATAGACCTACAATTGACAGTGCTGACAGATCACATTTAAAAAGGAAATTGGATCTAGAATTCCAGTAG 1209 0.4127 MSDFDLPKKVADRYLKREILGEGTYGVVYKAIDTKTGQTVAIKKIRLGKQKEGINFTALREIKLLKELKDPNIIELIDAFPHKENLHLVFEFMETDLEAVIRDRNIFLSPADIKSYLQMTLKGLAHCHKKWVLHRDMKPNNLLIGPNGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGTKQYGSGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAALGTPTSSQWPDMVYLPDYVEYQYVPAPPLRSLFPMASDDALDLLSKMLTYDPKVRISVQQALEHRYFSSVPLPTDPDKLPRPAPKRESKVSDFNPHEGPTVLSPPRKSRRVMPGRDGFEDNVGDYRQMVGDNTGKNDPAPMSLDFSIFGLKPPNRPTIDSADRSHLKRKLDLEFQ 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1506 402 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Glsi12g1506 402 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Glsi12g1506 402 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1506 402 MobiDBLite consensus disorder prediction 296 368 - -
Glsi12g1506 402 MobiDBLite consensus disorder prediction 306 320 - -
Glsi12g1506 402 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Glsi12g1506 402 SUPERFAMILY Protein kinase-like (PK-like) 9 302 IPR011009 -
Glsi12g1506 402 FunFam Putative cyclin-dependent kinase 7 95 310 - -
Glsi12g1506 402 FunFam Cyclin-dependent kinase D-1 5 94 - -
Glsi12g1506 402 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1506 402 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1506 402 PANTHER CELL DIVISION PROTEIN KINASE 12 300 - -
Glsi12g1506 402 Gene3D Phosphorylase Kinase; domain 1 6 94 - -
Glsi12g1506 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1506 Glsi-ChrGlsi12 32093793 32099361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1506 7 402 Core Cell Cycle Gene Families AT1G18040 77.778 0.0 626
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Glsi12g1506 Pkinase 5.5e-73 CL0016