Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1504 ATGATGACTGCCCTTCCCTTCCCGACAACCGAGTTAGGATTTCGCGGAAGAAGGAAACTACAGAGCCTTTTTTGACTTAAGGTGGAAAAGCCGAAAAGGAGCAGCAGGGAACAGCAGCTTCCAGAACAAAACCCCAGACGCCTCTCCAGTCTTGCTCTGCTTTCTCTTCCTCTCCAGTTGCGTGCTCGCCGAAGCCCTTGTTCCTTTGCAATTTTTCTGTGTTCATTCACCATGGATATCGAGGAGGACATCCGTTCTTTACAGCTTGATTCAGCAGAAGACAATAATGGGGTTGTTAATCCAGAGGATGCAAAGCCAGAAGTTGAGAATTCCATTAATATGGACGAAGATCCAAAGCAGAAGGTTCAGGCACAGCCTGTCCAGGCCGAGCCAAAAGTGAAAGATAAGGAACTTCCTCCTGTGGAAGATGAAGAGGATCAGGAGGAGTTAAATAAGAAAAGACACTTGAATGTTGTGTTTATTGGTCATGTTGATGCTGGTAAGTCTACTACTGGAGGCCAGATACTTTTCCTTAGTGGTCAGGTTGATGAACGTACAATCCAAAAATATGAGAAAGAAGCTAAGGACAAAAGTAGAGAAAGTTGGTATATGGCTTATATAATGGACACAAATGAAGAGGAGAGGGTAAAGGGAAAAACGGTTGAAGTTGGAAGAGCACATTTTGAGACAGAAAAAACAAGATTTACAATTTTGGATGCACCTGGTCACAAAAGCTATGTCCCCAACATGATTAGTGGGGCGGCTCAAGCTGATATTGGAGTTTTGGTAATTTCTGCTCGGAAGGGAGAATTTGAAACTGGATATGAGAGAGGTGGTCAAACTCGTGAACATGTCCAGCTTGCAAAAACATTGGGTGTGACTAAGCTTCTTGTAGTTGTTAATAAAATGGATGAGCCTACAGTGAAATGGTCAAAAGAAAGGTATGATGAAATAGAGTCAAAGATGATACCATTTCTGAAGTCATCAGGCTACAATGTAAAGAAAGATGTCCTCTTCTTGCCAACATCTGGGCTGACCGGTGCAAACTTAAAAGAAAGAGTGGATAAAAGCATTTGTCCATGGTGGGGTGGTCCCTGCCTGTTTGAAGCACTTGATGCTGTTGAAATTCCTGTTCGAGATCCCAAAGGCCCTTTCAGGATGCCTATAATTGACAAATTTAAAGACATGGGAACTGTTGTTATGGGCAAAGTGGAATCTGGTAGTGTTCGTGAGGGGGATTCCTTGTTGGTTATGCCAAATAAGGATCAAGTAAAAGTTATTGCTATATTCATTGATGAAGATAAAGTCAAACGCGCTGGACCTGGTGAAAATTTACGGATTAGAATATCTGGTGTTGAAGACGAAGACATATTATCTGGGTTTGTTCTGTCTAGTGTTGCCAATCCGATACCAGCTGTTACTGAGTTTGTTGCTCAGCTGCAGATCCTTGAGTTGCTGGATAATGCTATTTTTACTGCTGGGTACAAGGCTGTTCTGCACATCCACTCTGTAGTTGAAGAATGTGAGATTGTTGAGCTCCTACAGCAAATTGATCCAAAGACAAAAAAGCCTATGAAAAAGAAAATTCTCTTTGTGAAGAATGGTGCTGTAGTTATGTGCCGTATTCAGGTTAATAATTCGATATGCATTGAGAAGTTCTCTGATTTTCCCCAACTTGGTAGGTTCACTCTCCGCACTGAAGGAAAAACTGTCGCAGTGGGAAAAGTCACTGGTTTTTAA 1740 0.4213 MMTALPFPTTELGFRGRRKLQSLFXLKVEKPKRSSREQQLPEQNPRRLSSLALLSLPLQLRARRSPCSFAIFLCSFTMDIEEDIRSLQLDSAEDNNGVVNPEDAKPEVENSINMDEDPKQKVQAQPVQAEPKVKDKELPPVEDEEDQEELNKKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETEKTRFTILDAPGHKSYVPNMISGAAQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVTKLLVVVNKMDEPTVKWSKERYDEIESKMIPFLKSSGYNVKKDVLFLPTSGLTGANLKERVDKSICPWWGGPCLFEALDAVEIPVRDPKGPFRMPIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKDQVKVIAIFIDEDKVKRAGPGENLRIRISGVEDEDILSGFVLSSVANPIPAVTEFVAQLQILELLDNAIFTAGYKAVLHIHSVVEECEIVELLQQIDPKTKKPMKKKILFVKNGAVVMCRIQVNNSICIEKFSDFPQLGRFTLRTEGKTVAVGKVTGF 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1504 579 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 473 578 IPR009001 -
Glsi12g1504 579 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 133 377 - -
Glsi12g1504 579 CDD eRF3_II 384 465 - -
Glsi12g1504 579 Gene3D - 136 377 IPR027417 -
Glsi12g1504 579 Pfam Elongation factor Tu C-terminal domain 470 577 IPR004160 -
Glsi12g1504 579 Gene3D Translation factors 472 579 - -
Glsi12g1504 579 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 209 224 IPR031157 -
Glsi12g1504 579 PRINTS GTP-binding elongation factor signature 236 246 IPR000795 GO:0003924|GO:0005525
Glsi12g1504 579 PRINTS GTP-binding elongation factor signature 157 170 IPR000795 GO:0003924|GO:0005525
Glsi12g1504 579 PRINTS GTP-binding elongation factor signature 252 263 IPR000795 GO:0003924|GO:0005525
Glsi12g1504 579 PRINTS GTP-binding elongation factor signature 296 305 IPR000795 GO:0003924|GO:0005525
Glsi12g1504 579 PANTHER TRANSLATION FACTOR 145 577 - -
Glsi12g1504 579 MobiDBLite consensus disorder prediction 92 148 - -
Glsi12g1504 579 Gene3D Translation factors 382 467 - -
Glsi12g1504 579 SUPERFAMILY Translation proteins 376 469 IPR009000 -
Glsi12g1504 579 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 153 382 IPR000795 GO:0003924|GO:0005525
Glsi12g1504 579 FunFam Putative translation elongation/initiation factor family protein 471 579 - -
Glsi12g1504 579 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 388 IPR027417 -
Glsi12g1504 579 CDD EF1_alpha 157 378 - -
Glsi12g1504 579 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 381 467 - -
Glsi12g1504 579 MobiDBLite consensus disorder prediction 130 148 - -
Glsi12g1504 579 Pfam Elongation factor Tu GTP binding domain 153 359 IPR000795 GO:0003924|GO:0005525
Glsi12g1504 579 Pfam Elongation factor Tu domain 2 397 463 IPR004161 GO:0005525
Glsi12g1504 579 CDD eRF3_C_III 471 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1504 Glsi-ChrGlsi12 32076173 32088322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1504 153 574 Eukaryotic Initiation Factors Gene Family AT5G60390 38.118 2.03e-95 297