Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1499 ATGACTCCTCGTGCCGACGAATGCGAAGAAGAGGAGCTCTCCATCAGCGATGACGATGACGGTTTCAAGGAGGACATGGACGCCCTTGTACGAGCCTGCAGGATCGCTGGCACCAGCCCCGACGACATTAAAAGCCCTTCCCCTGTCGCACCCGACAATGAGCATGCGTTGTCTCGGGACGTGCATGACCCGCTCTTGGGCGACGGCGATGCTCTCGTCCCCATGACCGACTCGGACGATGAGCAGAATGATCTTCTGTATCTCAGAAGAGTACAGGAACTCTACCAGCCTTTATCTCTCAAGCCTTTGATTTCGTTTCCGCCGCCCTGTGTCTCCGATGACGAGGAAGATGATTTCGAAACCCTTCGTGCCATTCTGAAACGCTTTTCCGCCTACGGAGATAGTATGGAAAAATTGGCTGAGGGAGCTCATGCCTCAAGTCTAGTCTGTATGGGGGAAATTGCTAACAGTGTGACATCTAATGGATCAGATCCTTATGAATTGTCTCCTGTTTTTAAGGATGCTATTAAGACGACCAATTTGTTGACTGGTAATGTTGAGAGGCAGCCTTGTGATGTCAATGAGAGTTGTAATCCAGATGCTTGCAAGTCAACCGAGTTATCAGACAAAAGATCAAATTTTCCAGTGTCTGCTCAGGTTTTTATTGATGCCATCAAGAAGAATAGATCGTTCCAGCGGTTTCTCAGAAGTAAGTTGGTTCAGATGGAAGCAAAAATTGAGGAAAACAAACGGCTCAGGGAAAGAGTTAAACTTCTTAAAGACTTCCAGGCTTCATGCATAAGAAGAACAGGGCAAGCTTTGTCCCAGAAAAAGGATCCCCGTGTCCAGTTGATATCAACAAAAAAGTTCCCTGCTTCAAATAGCTCAAAGGTTAATGATAAAAAAATATCTGCAATGTGTTATGGCCCAGCTGAGAATGCTCATGTTAATAGTTATAGGATGGTTTTGGAAAGATTTCCTCTCTCATTGGATCGGAAAAAATGGTCGAGTGTGGAGAGGGAGAATCTTGCCAAGGGAATAAAACAACAATTTCAAGAAATGGTGCTTCAAATTTCAGTCAATCGAGTCAGTTCAGAGTGGTCGTTTGGAGATGCAAATGAATTTGATAACGTAGTTGCATCTATTAAAGATCTTGAAATTATGCCAGAGAATATTAGAAAGTTTCTGCCTAAAGTTAATTGGGATCGGTTGGCTTCTATGTATGTTGTTGGCCGTACTGGTGCAGAATGTGAAGCAAGGTGGTTGAATTGTGAAGATCCCTTGATCAATCATAGCCCATGGACATATGAAGAGGATAAGTTTCTCTTGCATACTGTACAAGAGATGGGCAATAGGAACTGGTTTGACATTGCTGTATTGTTAAAAACAAATAGGACTCCATTTCAATGCTTGGCACGGTACCAAAGGAGTTTAAATCCTTCCATGCTAAATAGTGAATGGACTGAGGACGAAGATGCTCAACTTTGTTCTGCTGTAGCAATTTTTGGTGAGAGTGATTGGCAGTCTGTAGCTTCCGTTTTAGAACGACGGACAGGAACCCAATGCTCTAATAGATGGAAAAAAGCACTCTGTCCTGAGAGAAAAGGGGGCTTTACTCCTGAGGAAGATGAGCGCTTAACAGTAGCTGTTCAGCTATTTGGACGGAAATGGAATCAAATAGCTAAATTTGTTCCTGGCCGGACCCAAGCTCAGTGTAGAGACAGATACGTCAATAGTTTGGATCCTTGTTTGAAATGGGGTGGATGGACTGAGGAAGAGGATTCAAGGTTGAAAGCAGCAATTGTTAAATATGGATACTGCTGGTCAAAGGTTGCTGAAGATGTGCCTCCACGTACTGATAGTCAATGTCGGAAGAGATGGAGGGTTCTGTGTCCTGACCAGGTTCCTTTGCTTCAAGCAGCAAGAAAGATGCAAAAAGCAGCCCTCATCAGTAACTTTGTTGATCGAGAGTCCGAACGTCCTTGCCTTTCTATAAATGATTTTCTTCCCTTAGCAATGTTGGATCCACCACGTGATGCTGATGTTGTGAACCTCCCTAGGAAACGGAAGAGCAAGTCAAGCAATATTCTCAAGAAAATGAGACCCAAAAAAAGTGCAGAAAAGGCTCAAAATTGTCTCAAGAAAATGAGACCCAAAAAACGTGCAAAAAAAGTTCAAAATTGTCCAGAGGTAGTACAGGATATAGTAGTCAGTGATGAGGTTGATCCTTGGAGTGGACGTGATGTCCACGTGCCAAATATCACTGAACCACATTTGAAGGACAATTCTGTTGAAGCAGTGTATGATTGTTCCAGATTTCCTTCAGACTCAGTTTTGATGGGAGCCAATGGCCAAGGGGATTTAGGTGGACAAGATACAAGGAATAATCTTATTGATTTAAACCCATTAGGGAAGGGTTGTACTGAATTACATGTAGATAACCGGACTTGTATGTCACCTTGTGGAAGTCCACAATCAGGGACAATAAATGGTGTTTATATTGAAAATAACAATGGGAATTGTTCAACTGACAGAAGAAAATTTTCTAAGCAGCAGTGTGGCAGGAAATTCTCTGCTAAAGACTCTTTGGAACACCGCACTGGAAAGTCAATGTCATCAGCAGATTTAACTGATGGTGGAGCTGTAGGCAGCAGCTTTGACAGAATAACTATTTCAAAGAAGGAAAGTAAGAAGTTCGGGAAACAGAACAGAATGATCGGAAGTGCTGAAACAGCAGAGGATCAGCTGGTTAAGAATAATATGTCAAAACCTGGAAGCCCATGTTCTTCTGTGCGGATTTTAGAACATCAAGATGGAGACAACATGACTCTTGCTTGCTTTTTACACAGTAGATCAAAGAGACAGTTTGAATCTACCAAAAATGTGGCTCAGGCCTCGATTCCCTGTACTACTGGTAAATCTGAATCACGTTCAAGCATTCACCAGGTTGAAAATCAAATCCAATCTGTTATGCAAAATGGTTTGTCTCAGACATGCAGTGGTGGAACTCCTCATTTGTTCCCTGGCAATCCACACCCTGCTAGTGCTGGAATTATACAAACCAGGAGGGTCAATGCCAGTGAACCTAAGGGAATAGATCTGATCATGGCTACTCATGGAGAAGTGAGAAACTCAGAGGATGTAAATATGTTAACTGATCATGATGATGGTGATATGACTCTTGCATGCTTTCTGGTAAATAAATCAGAGAAATACAGTCGAGCTGCGAAAGGAACTCATGCTTGCTTTTCCAGTTTGAAAAAGGGGTCTGTACTGCTTCCTGAAGAAGGGCACAAATGTCACGACCAAAACCAAAACGGGTCCATTATGCAAGGCACGGTGTCAGATAGAGGATGTAATGACGATACACCTGGAAATTTGTCAGCCTGCTACGAGCCTTGCTATTTGAAGAAAATGCCAACCATCAAAGCTGATAACAATGAGAAAGCAATGTCAGAGGCAGCTGAAGAGCAGACTATTGTTTTGGAAGCTGTGACAGAACCCAAAAACGTCAGCGTGGATGAAGATGAGGCTATTGATATCACCCTTGCTTCCTTCCTGCCAATTAAGGGAAGGAGATTGCGGAGAGCAGCCAAATGTGGTATCCGTCCCTTGTGA 3618 0.4317 MTPRADECEEEELSISDDDDGFKEDMDALVRACRIAGTSPDDIKSPSPVAPDNEHALSRDVHDPLLGDGDALVPMTDSDDEQNDLLYLRRVQELYQPLSLKPLISFPPPCVSDDEEDDFETLRAILKRFSAYGDSMEKLAEGAHASSLVCMGEIANSVTSNGSDPYELSPVFKDAIKTTNLLTGNVERQPCDVNESCNPDACKSTELSDKRSNFPVSAQVFIDAIKKNRSFQRFLRSKLVQMEAKIEENKRLRERVKLLKDFQASCIRRTGQALSQKKDPRVQLISTKKFPASNSSKVNDKKISAMCYGPAENAHVNSYRMVLERFPLSLDRKKWSSVERENLAKGIKQQFQEMVLQISVNRVSSEWSFGDANEFDNVVASIKDLEIMPENIRKFLPKVNWDRLASMYVVGRTGAECEARWLNCEDPLINHSPWTYEEDKFLLHTVQEMGNRNWFDIAVLLKTNRTPFQCLARYQRSLNPSMLNSEWTEDEDAQLCSAVAIFGESDWQSVASVLERRTGTQCSNRWKKALCPERKGGFTPEEDERLTVAVQLFGRKWNQIAKFVPGRTQAQCRDRYVNSLDPCLKWGGWTEEEDSRLKAAIVKYGYCWSKVAEDVPPRTDSQCRKRWRVLCPDQVPLLQAARKMQKAALISNFVDRESERPCLSINDFLPLAMLDPPRDADVVNLPRKRKSKSSNILKKMRPKKSAEKAQNCLKKMRPKKRAKKVQNCPEVVQDIVVSDEVDPWSGRDVHVPNITEPHLKDNSVEAVYDCSRFPSDSVLMGANGQGDLGGQDTRNNLIDLNPLGKGCTELHVDNRTCMSPCGSPQSGTINGVYIENNNGNCSTDRRKFSKQQCGRKFSAKDSLEHRTGKSMSSADLTDGGAVGSSFDRITISKKESKKFGKQNRMIGSAETAEDQLVKNNMSKPGSPCSSVRILEHQDGDNMTLACFLHSRSKRQFESTKNVAQASIPCTTGKSESRSSIHQVENQIQSVMQNGLSQTCSGGTPHLFPGNPHPASAGIIQTRRVNASEPKGIDLIMATHGEVRNSEDVNMLTDHDDGDMTLACFLVNKSEKYSRAAKGTHACFSSLKKGSVLLPEEGHKCHDQNQNGSIMQGTVSDRGCNDDTPGNLSACYEPCYLKKMPTIKADNNEKAMSEAAEEQTIVLEAVTEPKNVSVDEDEAIDITLASFLPIKGRRLRRAAKCGIRPL 1205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1499 1205 CDD SANT 538 580 IPR001005 -
Glsi12g1499 1205 CDD SANT 589 630 IPR001005 -
Glsi12g1499 1205 ProSiteProfiles Myb-like domain profile. 534 580 IPR001005 -
Glsi12g1499 1205 CDD SANT 486 528 IPR001005 -
Glsi12g1499 1205 MobiDBLite consensus disorder prediction 1 22 - -
Glsi12g1499 1205 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 426 478 IPR017930 -
Glsi12g1499 1205 Gene3D - 585 633 - -
Glsi12g1499 1205 Gene3D - 534 584 - -
Glsi12g1499 1205 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 479 534 IPR017930 -
Glsi12g1499 1205 Coils Coil 235 255 - -
Glsi12g1499 1205 SUPERFAMILY Homeodomain-like 408 475 IPR009057 -
Glsi12g1499 1205 ProSiteProfiles SANT domain profile. 533 578 IPR017884 -
Glsi12g1499 1205 ProSiteProfiles Myb-like domain profile. 479 530 IPR001005 -
Glsi12g1499 1205 SMART sant 430 480 IPR001005 -
Glsi12g1499 1205 SMART sant 483 532 IPR001005 -
Glsi12g1499 1205 SMART sant 534 582 IPR001005 -
Glsi12g1499 1205 SMART sant 331 427 IPR001005 -
Glsi12g1499 1205 SMART sant 585 633 IPR001005 -
Glsi12g1499 1205 SUPERFAMILY Homeodomain-like 560 634 IPR009057 -
Glsi12g1499 1205 MobiDBLite consensus disorder prediction 37 72 - -
Glsi12g1499 1205 SUPERFAMILY Homeodomain-like 510 582 IPR009057 -
Glsi12g1499 1205 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 581 635 IPR017930 -
Glsi12g1499 1205 ProSiteProfiles Myb-like domain profile. 581 631 IPR001005 -
Glsi12g1499 1205 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 15 1157 - -
Glsi12g1499 1205 Pfam Myb-like DNA-binding domain 538 597 - -
Glsi12g1499 1205 Pfam Myb-like DNA-binding domain 434 495 - -
Glsi12g1499 1205 Gene3D - 485 533 - -
Glsi12g1499 1205 Gene3D - 432 482 - -
Glsi12g1499 1205 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 535 575 IPR017930 -
Glsi12g1499 1205 ProSiteProfiles Myb-like domain profile. 426 478 IPR001005 -
Glsi12g1499 1205 MobiDBLite consensus disorder prediction 688 709 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1499 212 712 MYB-Related Transcription Factor Family AT3G18100 53.816 8.76e-180 543
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi12g1499 Myb_DNA-bind_6 2.6e-13 CL0123