Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1495 ATGAGGAAGCCAAGGTGCGAGAAGAAAGAAACCAAGAAAGGGTCGTGGTCCGAGCAAGAGGACCAGAAACTCATAGACTACATACAAAAACATGGTGAAGGCTGCTGGGCTTCCCTTCCTCAGGCTGCAGGGTTGCGTCGCTGTGGGAAAAGCTGCCGTTTAAGATGGTTAAACTATCTAAGGCCTGACCTTAAACGTGGAGGCTTTGGACAAGATGAAGAGGACTTAATCATCAGGCTTCATGCTCTTCTTGGCAACCGGTGGTCACTTATAGCTGGAAGACTACCAGGAAGGACAGATAATGAGGTCAAGAATTACTGGAATTCCCATATAAGAAAAAAGCTAATAGATCCCAATCATGTTGGTGGGTTTAAAGGCTCTGCAGTTGGAACTGGAAAATCGTTTGCCTCTAAGGATGATGATGAGACTAATTGTAAGCACCAAGAGCAGCGAAACTGCAACATCAACGGTTTGCCTGACTTGAATCTTGATCTTGCACTCAGTACATACTCTAGTGAGACAGAAGCTTGCAAGAATTCCTATCTCCTACCTAACGTTCCCAATGAAAATGAAGGCTAG 579 0.4508 MRKPRCEKKETKKGSWSEQEDQKLIDYIQKHGEGCWASLPQAAGLRRCGKSCRLRWLNYLRPDLKRGGFGQDEEDLIIRLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRKKLIDPNHVGGFKGSAVGTGKSFASKDDDETNCKHQEQRNCNINGLPDLNLDLALSTYSSETEACKNSYLLPNVPNENEG 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1495 192 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Glsi12g1495 192 Gene3D - 12 65 - -
Glsi12g1495 192 FunFam MYB-related transcription factor 12 65 - -
Glsi12g1495 192 CDD SANT 71 111 IPR001005 -
Glsi12g1495 192 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Glsi12g1495 192 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 150 - -
Glsi12g1495 192 CDD SANT 15 60 IPR001005 -
Glsi12g1495 192 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Glsi12g1495 192 Gene3D - 67 154 - -
Glsi12g1495 192 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
Glsi12g1495 192 SMART sant 65 113 IPR001005 -
Glsi12g1495 192 SMART sant 12 62 IPR001005 -
Glsi12g1495 192 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Glsi12g1495 192 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Glsi12g1495 192 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1495 Glsi-ChrGlsi12 32004215 32005006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1495 2 168 MYB Transcription Factor Family AT2G16720 51.795 2.60e-64 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi12g1495 Myb_DNA-binding 2.2e-16 CL0123