Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1486 ATGGACCCGACCTCGATCCCTCCTCCGGCCACCATCCCCGCTCCTATGTCTCTCTTCCCGGCCGAAGCTAACATTAACAATCATGTAGCTCCCGCCACGAACACCAATCCAAGTGCTGCCGCTGCTGCCGCTCCTCCTTCTCCTGCTCCAGCTCCAGCTACAGCATCCAATCACCCTCCCTATTCTGAGATGATATGTGCAGCAATCGAGGCTCTGAAGGAGAAAAATGGGTCCAGCAAGAGAGCTATCGCGAAGTACATAGAGCAAGCCTACAAGGACCTTCCACCGACTCACTCTGCTTTGTTGACTTACCACCTGCAGCGCTTGAAGAACAATGGTCTCCTTGTTATGGTCAAGAAATCTTACAAGCTCCCTAGATCTGATGATTCCTCCTCTACTGCCCAAAGGGGACGTGGAAGACCCCCAAAGCTCAAGCCGCAGACGCAGACGCAGCCCCAACCCCAGCCCCACTCCGAGCTTCAGCCCAACCCACAGCCCAACGTCACGCAAAATCTGCAAATTGCTGAGCCTGTGTGGGTTGCGCTTGGGCTTGCTGATGAGCCCGCAGAGGTGAAGAAAAGGGGCCCGGGTCGTCCACGGAAGAGTGTGGTAGCAGAAGGACTGGGCCTACCTGGGCCGGCAGTGCGGAGAGGGCGTCCACCTGGGTCAGGCAGATCTAGGTTGCCGAAGAGGCCCGGGCGGCCTCCCAAGCCTAAGTCTGTGTCGGCAATCTCTAATGGGCTGAAGAGGCGACCGGGTCGCCCGCCTAAAATCCAATCTAAACCAACGTTGATTCCTTTCGCAGCTCCCGCTCCCAGCACATCTGCCTTGCCTACTGTACCCACGGCACAGGCAACTGTACCAGATACTGCCCTACCAATTGTTTCTCCGAGACCTAGAGGACGGCCGAAGAAGAATGCTGCTGCAGTGGCAGCTTATGGATCCCCACTGCAAACTGTAGTTGTTGGTGGCCGTGGCCGTGGACGAGGACGTGGGCGTGGCGTCCTGCCGGGGATGAGGCCCAGGAATCCCACCGGAAGACCCGTTGGCCGACCTAAGAAGGGAACACCTTCTGATACTACCTTGCAAAAGATCGCTAACGAAGATCTCAGGAGGAAACTTGAATACTTTCAATCGAAAGTAAAGGAATCTCTTGGTGTGCTGAAGCCTCATTTTAATCATGAAAGCCCAGTCACTGCAATTGCTGCAATCCAAGAGTTAGAAATACTGGCAACTATGGACCTTAGTGCGCCATTAAATGATGATACACAGCAACTGCAGCAATTGCCCGAGCCACAGGCGCAATCTCAGCCTCAGTCACAGCCTCAGTCTCAGCAACTACCACAGCTGCAGATGTTTCAACAGCCAATGTCACAGGCGCCTATGTATCAGCAGCAATTGCCACAGCCACATATGTATCAGCAGCAATTGCCACAGCCTCAGATGTATCAACAGCAATTGCCGCAAGTACCATTGCAGTCACAGCCGCAGCCACAGCAATTTTTTCAGCCACATGCTTGA 1521 0.5444 MDPTSIPPPATIPAPMSLFPAEANINNHVAPATNTNPSAAAAAAPPSPAPAPATASNHPPYSEMICAAIEALKEKNGSSKRAIAKYIEQAYKDLPPTHSALLTYHLQRLKNNGLLVMVKKSYKLPRSDDSSSTAQRGRGRPPKLKPQTQTQPQPQPHSELQPNPQPNVTQNLQIAEPVWVALGLADEPAEVKKRGPGRPRKSVVAEGLGLPGPAVRRGRPPGSGRSRLPKRPGRPPKPKSVSAISNGLKRRPGRPPKIQSKPTLIPFAAPAPSTSALPTVPTAQATVPDTALPIVSPRPRGRPKKNAAAVAAYGSPLQTVVVGGRGRGRGRGRGVLPGMRPRNPTGRPVGRPKKGTPSDTTLQKIANEDLRRKLEYFQSKVKESLGVLKPHFNHESPVTAIAAIQELEILATMDLSAPLNDDTQQLQQLPEPQAQSQPQSQPQSQQLPQLQMFQQPMSQAPMYQQQLPQPHMYQQQLPQPQMYQQQLPQVPLQSQPQPQQFFQPHA 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1486 506 Coils Coil 69 89 - -
Glsi12g1486 506 CDD H15 58 125 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi12g1486 506 MobiDBLite consensus disorder prediction 190 364 - -
Glsi12g1486 506 PRINTS Histone H5 signature 71 88 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Glsi12g1486 506 PRINTS Histone H5 signature 189 208 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Glsi12g1486 506 PRINTS Histone H5 signature 44 65 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Glsi12g1486 506 Pfam linker histone H1 and H5 family 58 120 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi12g1486 506 MobiDBLite consensus disorder prediction 428 506 - -
Glsi12g1486 506 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 57 126 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi12g1486 506 PANTHER HISTONE H1 32 259 - -
Glsi12g1486 506 MobiDBLite consensus disorder prediction 28 57 - -
Glsi12g1486 506 SUPERFAMILY "Winged helix" DNA-binding domain 56 131 IPR036390 -
Glsi12g1486 506 Gene3D - 54 136 IPR036388 -
Glsi12g1486 506 SMART h15plus2 55 121 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi12g1486 506 MobiDBLite consensus disorder prediction 124 168 - -
Glsi12g1486 506 SMART AT_hook_2 135 147 IPR017956 GO:0003677
Glsi12g1486 506 SMART AT_hook_2 214 226 IPR017956 GO:0003677
Glsi12g1486 506 SMART AT_hook_2 297 309 IPR017956 GO:0003677
Glsi12g1486 506 SMART AT_hook_2 346 358 IPR017956 GO:0003677
Glsi12g1486 506 SMART AT_hook_2 193 205 IPR017956 GO:0003677
Glsi12g1486 506 SMART AT_hook_2 249 261 IPR017956 GO:0003677
Glsi12g1486 506 MobiDBLite consensus disorder prediction 144 168 - -
Glsi12g1486 506 PRINTS AT-hook-like domain signature 135 145 IPR017956 GO:0003677
Glsi12g1486 506 PRINTS AT-hook-like domain signature 295 306 IPR017956 GO:0003677
Glsi12g1486 506 PRINTS AT-hook-like domain signature 344 354 IPR017956 GO:0003677
Glsi12g1486 506 FunFam Histone H1.2 54 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1486 Glsi-ChrGlsi12 31937616 31940768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1486 64 139 Single Myb Histone (SMH) Gene Family AT1G49950 40.789 8.11e-07 48.9