Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1479 ATGTGTGTCGACGCGGGATCAAAACGCGGATTGCACGCGTACCGTACGAGGCTGACAAATAAAGCTGTTAAGGGAAAGGGATTCATTGCCAAAGACATAGGGTTTCTAAACACCGCAGGTGCATCAAAACACCAAGCCGTGGCACTCCGATCAGGCTCAAACCAATCTGTGTTCTTTAGGTGCTCTTTTGATGGCTACCAAGACACTCTATATGCTCATTCCAACCGACAGTTCTACTCAGAATGTGACATCACAGGAACCATAGACTTCATTTTTGGAAATGCAGCTGTAGTCTTCCAAAACTGCAACATCAAACCTAGGCAGCCCCTACCAAACCAGTTCAACACCATCACAGCTCAGGGCAAGAAGGACCCAAACCAGAACACTGGGATTATAATCTAG 402 0.4677 MCVDAGSKRGLHAYRTRLTNKAVKGKGFIAKDIGFLNTAGASKHQAVALRSGSNQSVFFRCSFDGYQDTLYAHSNRQFYSECDITGTIDFIFGNAAVVFQNCNIKPRQPLPNQFNTITAQGKKDPNQNTGIII 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1479 133 SUPERFAMILY Pectin lyase-like 22 133 IPR011050 -
Glsi12g1479 133 Gene3D - 5 133 IPR012334 -
Glsi12g1479 133 Pfam Pectinesterase 19 133 IPR000070 GO:0030599|GO:0042545
Glsi12g1479 133 ProSitePatterns Pectinesterase signature 2. 84 93 IPR033131 -
Glsi12g1479 133 PANTHER PECTINESTERASE 21 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1479 Glsi-ChrGlsi12 31894040 31897102 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1479 22 133 Carbohydrate Esterase AT1G53840 76.786 4.67e-61 195