Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1473 ATGTGGATGATGGATTATAATGATGGCGGTGAGTTCAACATGGCTGATCATGCATTCAATGGAAGGAAACTTAGGCCTCTCATTCCAAGGCCAGTGACTTCTCCTCCTATCAATACTTCAACTACAACAACTCCTTCCTTGAACCGTGCTCATGCCACCGATTTCTTTTCACAATATCACAATCTGGCATCAGTGACAGAGCAGAGTAAAAGAGAGTTCAATACTAGTCCACCAGTTGTGGTGAGCACAAGGTGGAATCCTACCCCAGAGCAGCTAAGAGCTCTGGAAGAACTGTATCGACGAGGGACAAGGACACCCTCTGCGGAGCAAATTCAGCATATCACTGCACAGCTTCGAAGATTTGGTAAAATTGAAGGCAAGAATGTTTTCTATTGGTTTCAGAATCACAAAGCCAGAGAAAGGCAGAAACGCCGCCGTCAAGTGGAATCAGCTGCTGCTGAGGGTCTTCACCCCCGTGATCATCTTGATAATCTAGAAAAGAAAGACTTAGGCGCAATTAGGACAGTGTTTGAAGTTGAACAGACCAAGAACTGGGCACCCTCTACAAACTGCAGTACTCTTACAGAGGAAATTGAAGTGCCCCTAATTGAAATTTGTGCCACCCAATGCCTCTTCTCTCCTTTGGTTTTAAACATACATGCTGAGGTTTCCTCGGGTTTGCATGTCTTTGAATTAACTTCTCAGGAATCTGTTTCAATACAAAGAGCAGCAGCAGCAGCAAAAGCAGCAGTTGCAGAGAGTAGAACAGATGGATGGGTTCAATTCGATGAATTAGGAGAATTGGAACAACATCAAAGAAGGAACTTTATCGAAAAGAATGCCACGTGGCACATGATGCAGTCATCATCATGTCCTCCTCCTACTTGCTCTACAACTAGCAATATTGCTACCACTACAGCCACAGTAACAGGCAGAGGATTAATGGACCCAACGCTCATTAAGACCCATGGTCATCTCAGCTTTTTCCTTTCACCTCACAGAGAAAATGGTGTTATCCAGATAAACAGTATGATCAGCAGTAGTGAAGAAGACGAAAACCGTGTGGAATCCCAAACCCTTCAACTTTTCCCACTTGGGAGTGAGAACATTAACCAGAAAGAGACAGAGATATCAATACCAGCAATGAATGCCAACTTGACCCCAAGCCAATTTTTTGAGTTCCTTCCATTGAAGAACTGA 1200 0.4392 MWMMDYNDGGEFNMADHAFNGRKLRPLIPRPVTSPPINTSTTTTPSLNRAHATDFFSQYHNLASVTEQSKREFNTSPPVVVSTRWNPTPEQLRALEELYRRGTRTPSAEQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQVESAAAEGLHPRDHLDNLEKKDLGAIRTVFEVEQTKNWAPSTNCSTLTEEIEVPLIEICATQCLFSPLVLNIHAEVSSGLHVFELTSQESVSIQRAAAAAKAAVAESRTDGWVQFDELGELEQHQRRNFIEKNATWHMMQSSSCPPPTCSTTSNIATTTATVTGRGLMDPTLIKTHGHLSFFLSPHRENGVIQINSMISSSEEDENRVESQTLQLFPLGSENINQKETEISIPAMNANLTPSQFFEFLPLKN 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1473 399 Pfam Homeodomain 83 142 IPR001356 GO:0003677
Glsi12g1473 399 CDD homeodomain 83 144 IPR001356 GO:0003677
Glsi12g1473 399 FunFam WUSCHEL-related homeobox 4 82 149 - -
Glsi12g1473 399 ProSiteProfiles 'Homeobox' domain profile. 88 143 IPR001356 GO:0003677
Glsi12g1473 399 SUPERFAMILY Homeodomain-like 83 147 IPR009057 -
Glsi12g1473 399 SMART HOX_1 80 147 IPR001356 GO:0003677
Glsi12g1473 399 Gene3D - 80 142 - -
Glsi12g1473 399 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 67 392 IPR044555 GO:0003700|GO:0099402
Glsi12g1473 399 MobiDBLite consensus disorder prediction 26 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1473 Glsi-ChrGlsi12 31875094 31877121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1473 1 399 Wox Gene Family AT3G18010 36.092 1.91e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Glsi12g1473 Homeodomain 1.8e-19 CL0123