LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi12g1457	ATGCCAGCTCTCGTTGTTACATTTCAAGCTCAACTTATAGCTCTTAAATACCCCACAGTTGCAGCAGCTGGGGAAGCCGGAAAGAGAGGCCAAAAGTGGTTGCTGAAAATAACTGCAATGGCAATGCTAGACAAGACAGGCACAAGCAAAAACTTGGAGAGTTTATTGGACATGGACAAAACAGGAACCACAAAAAATGAGCAACAACTGAGACCCCAGAAGTCCATTGCTAGTTATGGCCTAGAATTCAATAATATATCTTACCAAGTCATTAAGAAGCAGAAAAAGGACGGAGTGTGGATAAAAAAAGAAGCATATCTTCTTCATGACATCTCTGGCCAGGCAATCAGAGGTGAAATTCTGGCAATCATTGGGCCTAGTGGGGCAGGCAAATCGACCTTTCTTGATGCCTTGGCTGGCCGAATTGCTCAAGGGAGTCTGGAAGGATCAGTTAGAATTGATGGAAAGCCTGTAAAAAAAAATGAACTCCATCTGTTTGATGTAACTACAAGTTACATGAAGATGGTGTCATCATATGTGATGCAAGATGACCAGCTTTTCCCAATGTTGACAGTTTTAGAGACACTTATGTTTGCAGCTGAGGTTAGGCTTCCTCCTTCCATTTCCAGGGAGGAAAAGAAGAAGAGAGTTTATGAGCTCCTTGATCAACTGGGCTTGCAGAGTGCAACACATACATATATTGGTGATGAGGGGAGGAGAGGAGTGTCAGGAGGGGAACGACGAAGGGTGTCTATTGGCATAGACATCATTCATAAACCATCACTTCTGTTTCTTGACGAACCAACCTCAGGACTTGACTCTACAAGTGCTTGTAGTGTGGTGGAAAAGGTTAAAACCATAGCTCGAGGTGGTAGCATCGTCCTTATGACCATACATCAGCCTTCATTCAGAATTCAAATGCTCCTGGACCGGATCACCATCCTTGCAAGGGGAAGACTGATATACATGGGAAGGCCAGATGAACTTTCTGCTTACCTTTCTGGATTTGGAAGACCAGTACCGGATGGAGAAAACAGTATTGAGTATCTCCTAGATGTTATTAAAGAATATGATGAATCAACACTTGGGCTTGACCCCCTTGCTCTATACCAACGTGATGGCCAGAAGCCCGACCAAGCAGCCATGACACCCGTTCCAAAAACTCCAAGAACGCCTTATAGAAAGAACAGTACCCCTGCATCTAAAGACATGATTAGCCTAAGCAGCCAAGGGTTTACTGCTGGAACACCAAAATCTGACTCTGCGCAATTTGATTATGATGATGACGACGACGACGAGAATTTCGATAACTCGCTAGAAAGGAGAAGTGCTCAAACACCAAGGAATATGACTAGTGGTGTCTACTACCCACGTTTGGCTTCTCAGTTCTACAAAGATTTCTCACCCAAGGATTTCTCCGTCTGGCTTTACCATGGTGTCGTAGGAAACCCCCGTCGCCCACCATCGTGGACACCTGCAAAAACACCTATTTCAGCATCAAGAAGTGCCGTTTCCAGCCAATATTCTGCATCTTATGAGGACCCTTATCGCCCCAAAGCCTCTGCAGTGGCTAGCCAATCTATGGACTCCTATGCACCTTCTTATGAAGAGTTTGAGATTGAAGAAGTGCTTGATGAGCCAAAACTAGGATCCAAGTTTGCAAACCCATGGCTGCGTGAGATTGCAGTACTGTCATGGAGAACCGCTCTCAATGTGATTCGCACCCCAGAACTCTTCCTATCTCGTGAGGTTGTGTTAACTGTTATGGCACTTATCCTTTCGACCATTTTCAAACATCTGGGTCATTATACTTTCAAAGACATAAATAGGCTTCTCAACTTCTACATCTTTGCAGTGTGCCTTGTTTTCTTCTCTTCCAATGATGCTGTTCCAACTTTTATTTTGGAAAGATTCATCTTCATCAGAGAGACATCCCATAATTCTTATCGTGCTTCTTCTTATGTCATTTCTTCCCTCATTGTTTATCTCCCATTTTTTGCTGTTCAAGGCTTCACTTTTGCTGCTATAACCAAAGTAATGCTCCATTTACAAAGCAGTCTCTTTCATTTTTGGATGGTCCTTTTTGCCTCGCTTATTACTACCAATGGCTATGTGATGCTAGTTAGTGCACTTGTTCCAAATTACATCACAGGGTATGCGGTAGTCATAGCCACAACGGCTCTCTTCTTTTTGACTTGTGGTTTCTTCCTCAAGCGAACTCAGATACCCCTTTACTGGAAGTGGCTGCACTATATTTCTGCAATCAAATATCCATTTGAGGCATTGCTGATAAATGAATTCAAGAATGATCAATGCTACAAAGGGAACCCAGCAGACTTATCCCCTGGCCCATTGGGACAGGTGATGTCGAGGTTCCACCATACAGTGTTGAACATCACAAGTGATTGCCTAATAGGAGAAGATGTTTTGTACACAATGGATATTGAAAGAGAGAACATATGGTATGACATCTTCATCCTGTTGGCTTGGGGTGTTCTTTACAGGTTTTTCTTCTTTTTGGTTTTGAGATTTTACTCCAAGAATGAGAGAAAATGA	2556	0.4311	MPALVVTFQAQLIALKYPTVAAAGEAGKRGQKWLLKITAMAMLDKTGTSKNLESLLDMDKTGTTKNEQQLRPQKSIASYGLEFNNISYQVIKKQKKDGVWIKKEAYLLHDISGQAIRGEILAIIGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVKKNELHLFDVTTSYMKMVSSYVMQDDQLFPMLTVLETLMFAAEVRLPPSISREEKKKRVYELLDQLGLQSATHTYIGDEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSACSVVEKVKTIARGGSIVLMTIHQPSFRIQMLLDRITILARGRLIYMGRPDELSAYLSGFGRPVPDGENSIEYLLDVIKEYDESTLGLDPLALYQRDGQKPDQAAMTPVPKTPRTPYRKNSTPASKDMISLSSQGFTAGTPKSDSAQFDYDDDDDDENFDNSLERRSAQTPRNMTSGVYYPRLASQFYKDFSPKDFSVWLYHGVVGNPRRPPSWTPAKTPISASRSAVSSQYSASYEDPYRPKASAVASQSMDSYAPSYEEFEIEEVLDEPKLGSKFANPWLREIAVLSWRTALNVIRTPELFLSREVVLTVMALILSTIFKHLGHYTFKDINRLLNFYIFAVCLVFFSSNDAVPTFILERFIFIRETSHNSYRASSYVISSLIVYLPFFAVQGFTFAAITKVMLHLQSSLFHFWMVLFASLITTNGYVMLVSALVPNYITGYAVVIATTALFFLTCGFFLKRTQIPLYWKWLHYISAIKYPFEALLINEFKNDQCYKGNPADLSPGPLGQVMSRFHHTVLNITSDCLIGEDVLYTMDIERENIWYDIFILLAWGVLYRFFFFLVLRFYSKNERK	851

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi12g1457	851	PANTHER	ABC TRANSPORTER G FAMILY MEMBER 28	57	836	-	-
	Glsi12g1457	851	MobiDBLite	consensus disorder prediction	373	446	-	-
	Glsi12g1457	851	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	103	332	IPR027417	-
	Glsi12g1457	851	ProSitePatterns	ABC transporters family signature.	242	256	IPR017871	GO:0005524\|GO:0016887
	Glsi12g1457	851	Pfam	ABC transporter	108	270	IPR003439	GO:0005524
	Glsi12g1457	851	CDD	ABCG_EPDR	81	324	-	-
	Glsi12g1457	851	SMART	AAA_5	117	327	IPR003593	GO:0016887
	Glsi12g1457	851	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	81	342	IPR003439	GO:0005524
	Glsi12g1457	851	Pfam	ABC-2 type transporter	560	767	IPR013525	GO:0016020\|GO:0140359
	Glsi12g1457	851	Gene3D	-	81	335	IPR027417	-
	Glsi12g1457	851	MobiDBLite	consensus disorder prediction	390	420	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi12g1457	Glsi-ChrGlsi12	31752636	31756052	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi12g1457	118	408	Calmodulin-binding Proteins	AT2G36910	23.490	3.70e-10	62.0