Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1456 ATGAAATTGCTTCCAGATCTCCTACCCAATAGTTCCTTTTTTGGGGATTCATATGTGCAATATTTCGCTGCTGTAGTTGTTCTTAGTCATTCAGCAACTGTGTGGGGTTCAGGAATGCAGTGGTCATTCTCAAACAAGGTCTCTGCTCTTCCTCATCTGCTGTCCTTCAAGGCCACTCAGGAGGATAGGACAAGAAAGACCAGCGTTGATCCAATAGCATCATCTGGGTATATGAATATGACCATATCAACGGTGAATGCTTTCGACTCTAACCAGAAACCATTCTTGGGTGTGATCGAGAAAAATTTGAGCATGGGCAAACAAGGAGGAAACAAACGTGGACTTACTGTATATCCTGTGCAACATTTTGATGCACATTCAGCCAGCTCTCTAGAAGCAAGAACATATTCAGTTTCGAACCAATTAAATCAAATAAGTCCTGTTCACCAATCTAATATTGCTACTACTGGCCAGAACATGGTCACTTCTGCCATGAAACCACACCTTCATGGAGGAGTCCTAATACCTGCCCCGGTATCTGTTCTTCCATCTCAAGTTTCCATTGTTGGCACCACCGACTTAAGGAATTCCTCCAAATCCTCTGGCACATCTGATCAGCTGACCATTTTCTATGCCGGTTCAGTGTGCGTTTATGACGGCATAACTCCTGAGAAGGCCCAGGATATCATGTTACTGGCTGGAAATGGGTGCACTCCAAATCAAAAAAAGACAGTTTCGATAGCTCAAGTGCAGGCACCAAACACTAGGCCTTCCAAAGACAATGGCTTTATTATAAGCCAATCCTATCCTTCGCCCTTACCAAGCCCACTTCCCATGAACTTCCATGCCAGTTCGCAACCTGGGGGTGGATCTTCTAGCAACAATGAACTTGCAATAATGAGACCAGTAGGATCTTCTGCTTCACCCAGTAGCCATTTGGAGTCTCGTACTGTAGTTGGCTCTGTAAAATCTGCAGCTACAAAAATGGTTCCACCTGGCTTGCCTCAGGCACGTAAAGCATCTTTGGCTCGGTTTTTAGAGAAGCGCAAGGAAAGGGTGACGAGCACATCGCCATACTATATGAGCAAGAAATCACCTGAATGCGGCACACCTGGTTCAGATGGTGTTATGGATACAGCATCCTTTCAGAGAACAGTTGTTCAACTGAACCTTGAACTCCCTGCATTTTTTAACAGTATTGTGTGCCTACCGGTTGATCGCATTTACACATCCGTGAGGACAAAATTTGTTGTCTTTCTTCGTGGAAGCCTAAAGGTCAGCAAGGTCGATCAGAGCCCACACTGCTTACCTATACTGAATACAAACCCTAAATTCTACGGGATTCGGTTGCTTTCAGTGTGTAAAGTGGTGGCCGGTGGAGGTGGGAGAGAGAGAGAGAGAGATAGAGAGCATCAATCCATGGACGATGCCACAGTAGCAGAGCTAAAGCAATTTATAGACGGGTGCAAGTCAAATCCTTCAATTGTTCACATTCCATCTCTTGCGTTCTTCAAGTCTTATCTTATCAGCCTAGGTGCTCGGCTACCACCAGAACCGAAAACGGATAAAGTTGATGATAACATGTCAGAGCATTGTGATGTTAAAAGAGCTGATTTATCTGGAGAAGATGAAGATGACATTGTAGAATCTGATATTGAGTTTGATAATACTGATGTTGTGGAACCTGATAATGATCCTCCTCAAAAGATGGGAGATTCTTCTGCTGAGGTAACAGAAGATCAGCAGGACGCTGCACAAGTAACAAAATCTAAGGCCATGGAGGCTATTTCAGAAGATAAGCTGGATGAAGCAGTGGATCAACTAACAGAAGCCATTATCTTGAATCCCCATTCAGCAATACTCTATGCTACTAGAGCTAGTGTCTTTATCAAATTGAAGAAACCAAATGCTGCAATTCGTGATTCTGATACTGCCTTACAGATAAATCCTGACTCAGCTAAGGGATACAAAATACGAGGAATGGCAAGGGCTATGTTGGGACTCTGGGAGAAAGCAGCAAGTGATCTTCATGTAGCTTCAAAGTTAGATTATGATGAAGAGATTGGAATGGCACTTAAAAAGGTTGAGCCTAATGCCCACAAAATTGAGGAGCATAGGAGAAAATATGAACGCTTGCACAAGCAAAGGGAGCAGAAGAGAGCTGAACTCAAGAAGCAACAAGAAGCGGAAGCCCAAGTTCAAGAAGCACTGTCTGCTCTGAAAGATGGGCAAGTCATCGGTATTCATTCTGTTCATGAATTGGAAACGAAGCTGAGTGCTGCTTCAAAGACATCTCGCCTGGCTATCCTGTATTTTACTGCAACATGGTGTGGCCCCTGTCGTTTCATTGCACCTCATTATACAAGCTTGGCTGAGAAGTACCCAAAAGTTGTGTTCTTAAAAGTTGACATAGATGAGGCAAGGGATGTAGCTGCACGCTGGAATATTAGCAGTGTTCCTACCTTTTTCTTTATTAAGAATGGCAAAGAAGTTGACAGTGTGGTGGGTGCAGACAAAAGTTCCCTTGAAAGGAAGATTGTGCAACACGCCAACTCTGTTTAA 2562 0.4375 MKLLPDLLPNSSFFGDSYVQYFAAVVVLSHSATVWGSGMQWSFSNKVSALPHLLSFKATQEDRTRKTSVDPIASSGYMNMTISTVNAFDSNQKPFLGVIEKNLSMGKQGGNKRGLTVYPVQHFDAHSASSLEARTYSVSNQLNQISPVHQSNIATTGQNMVTSAMKPHLHGGVLIPAPVSVLPSQVSIVGTTDLRNSSKSSGTSDQLTIFYAGSVCVYDGITPEKAQDIMLLAGNGCTPNQKKTVSIAQVQAPNTRPSKDNGFIISQSYPSPLPSPLPMNFHASSQPGGGSSSNNELAIMRPVGSSASPSSHLESRTVVGSVKSAATKMVPPGLPQARKASLARFLEKRKERVTSTSPYYMSKKSPECGTPGSDGVMDTASFQRTVVQLNLELPAFFNSIVCLPVDRIYTSVRTKFVVFLRGSLKVSKVDQSPHCLPILNTNPKFYGIRLLSVCKVVAGGGGRERERDREHQSMDDATVAELKQFIDGCKSNPSIVHIPSLAFFKSYLISLGARLPPEPKTDKVDDNMSEHCDVKRADLSGEDEDDIVESDIEFDNTDVVEPDNDPPQKMGDSSAEVTEDQQDAAQVTKSKAMEAISEDKLDEAVDQLTEAIILNPHSAILYATRASVFIKLKKPNAAIRDSDTALQINPDSAKGYKIRGMARAMLGLWEKAASDLHVASKLDYDEEIGMALKKVEPNAHKIEEHRRKYERLHKQREQKRAELKKQQEAEAQVQEALSALKDGQVIGIHSVHELETKLSAASKTSRLAILYFTATWCGPCRFIAPHYTSLAEKYPKVVFLKVDIDEARDVAARWNISSVPTFFFIKNGKEVDSVVGADKSSLERKIVQHANSV 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1456 853 PANTHER HSC70-INTERACTING PROTEIN 474 849 - -
Glsi12g1456 853 SUPERFAMILY TPR-like 578 686 IPR011990 GO:0005515
Glsi12g1456 853 Gene3D - 472 517 - -
Glsi12g1456 853 ProSiteProfiles Thioredoxin domain profile. 726 851 IPR013766 -
Glsi12g1456 853 Pfam Hsp70-interacting protein N N-terminal domain 475 516 IPR034649 GO:0046983
Glsi12g1456 853 ProSitePatterns Thioredoxin family active site. 769 787 IPR017937 -
Glsi12g1456 853 Pfam Thioredoxin 762 846 IPR013766 -
Glsi12g1456 853 Pfam Jas motif 335 360 IPR018467 -
Glsi12g1456 853 MobiDBLite consensus disorder prediction 555 578 - -
Glsi12g1456 853 FunFam FAM10 family protein 546 719 - -
Glsi12g1456 853 Pfam tify domain 203 234 IPR010399 -
Glsi12g1456 853 Gene3D Tetratricopeptide repeat domain 546 719 IPR011990 GO:0005515
Glsi12g1456 853 ProSiteProfiles Tify domain profile. 200 235 IPR010399 -
Glsi12g1456 853 SUPERFAMILY Thioredoxin-like 700 851 IPR036249 -
Glsi12g1456 853 CDD TRX_family 758 846 - -
Glsi12g1456 853 FunFam TPR repeat-containing thioredoxin TDX 720 852 - -
Glsi12g1456 853 Gene3D Glutaredoxin 720 853 - -
Glsi12g1456 853 SMART tify_2 200 235 IPR010399 -
Glsi12g1456 853 Coils Coil 702 736 - -
Glsi12g1456 853 CDD Hip_N 476 516 IPR034649 GO:0046983
Glsi12g1456 853 SMART tpr_5 619 652 IPR019734 GO:0005515
Glsi12g1456 853 SMART tpr_5 585 618 IPR019734 GO:0005515
Glsi12g1456 853 SMART tpr_5 653 686 IPR019734 GO:0005515
Glsi12g1456 853 FunFam Hsc70-interacting protein-like protein 474 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1456 Glsi-ChrGlsi12 31742758 31751930 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1456 39 365 Tify Gene Family AT3G17860 39.244 2.51e-41 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Glsi12g1456 Thioredoxin 6.1e-25 CL0172