Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1454 ATGCTGCCTCAGAAATTCACTGTGTTGATTACCCTCTTCCTCGTTTTGCTTCCTTTAGTAAAACCAGATCTGGATTCTGAGCGAGCCGCTCTCTTGGTTCTACGTTCGGCGGTGGGAGGTCGAACCCTTCTCTGGAATGTCACCCGGCAGAGTCCCTGTAACTGGGCTGGTGTCCAATGCGAGCATGACCACGTCGTCGAGCTTCATCTCCCCGGTGTTGCGCTTTCAGGTCAATTACCCACTGGCGTTTTCGGCAACCTCACTCACCTCCGCACTGTCAGTCTGCGTTTCAACGCCTTGACCGGTAGGCTTCCTTCGGATCTCGCTTCTTGCGTCGACCTTCGCAACCTTTACTTGCAGCGAAATTTACTCTCTGGAGAGATCCCAGAATTTTTGGTCAGGCTGCCCGACTTGGTTCGCCTTAATTTGGCATCGAACAATTTTTCCGGTGAAATTCCACTGGGGTTTAACAAATTGATAAGGCTGAAGACTCTGTTTCTCGAAAACAATCAGCTTTCAGGTTCTATCCCTAGTATGGACACGCTAAAGCTTGAGCAGTTCAATGTGTCAAACAATTTGCTAAACGGGTCAGTGCCAACAAAGTTACAGACATTTTCTGAAGATTCATTTTTAGGCAATTCACTATGTGGGAAGCCCCTTAAGCTTTGCCCAGGAGATGGAACTGGAACTCCTCCGGCGGGTGAGATTGAAAATAATGAGGGGAACAAGAAAAAGAAGAAATTGTCTGGTGGGGCCATTGCTGGAATCGTTGTTGGATCTGCTGTGTGTCTTCTGTTGATTCTGTTCGTTCTGATCCTTCTGTGCCGAAAGAAGAGTAGTAAGAATACAAGTTCTGTCGACACTGCAACTGTGAAGCAACCTGATACCGAAATTTCGGGCGAGAAACCCGTTTCCGATGTGGAGAATGATGGTCACAGTAATGGGTTCTCGGTGGCTGCAGCGGCTGCAGCAGCGATGACAGGGAACGGCAAAGCAGAAGCTAACAGTGCTGGAGCGAAGAAGTTGGTGTTTTTTGGTAATTCACCCAAGGTGTTTGATCTCGAGGATTTGCTTAGAGCTTCGGCAGAGGTTTTGGGTAAAGGGACGTTTGGAACAGCCTATAAGGCGGTTTTGGAAGTTGGTCCGGCGGTGGCTGTGAAAAGGTTGAGGGATGTGACAGTTTCGGAGAAGGAATTCAAGGAAAAGATTGAAGCGGTGGGAGCAATGGATCATGAGAATTTGGTCCCTCTCAGGGCTTACTATTTTAGCAGAGATGAAAAGCTACTTGTCTATGATTACATGCCAGTGGGAAGTTTATCTGCACTTTTGCACGGAAACAAAGGAGCGGGTAGGACGCCACTAAATTGGGAAATCAGATCAGGCATTGCGCTTGGAGCTGCCCGTGGCATCGAGTACCTACATTCACAGGGGCCTAATGTTTCTCATGGAAGCATAAAGTCATCTAACATCCTCCTCACCAAATCTTATGATGCCAGAGTATCTGATTTTGGTCTGGCTCATCTTGTTGGTCCCTCCTCCACTCCCAACCGGGTTGCTGGCTACCGTGCACCTGAGGTAACCGATCCTCGCAGAGTTTCTCAAAAGGCAGATGTTTACAGCTTTGGTGTGTTGCTCTTGGAACTTCTGACTGGAAAGGCTCCTACCCATGCTCTCTTGAATGAGGAAGGAGTGGACCTCCCAAGATGGGTGCAGTCTGTTGTTAGAGAAGAGTGGACATCTGAAGTATTTGATCTTGAGCTCCTTAGGTATCAGAATGTTGAGGAGGAGATGGTTCAGTTATTGCAACTTGCTGTAGATTGTGCAGCCCAGTATCCTGATAAGCGCCCTTCAATGTCCGAAGTGACAAAGCGCATAGAAGAGTTACGTCGTTCTAGCTTGAAAGAGGATCAAGACCAAACCCAACAGCCTGATCTGATCAACAATATAGATGATGTATCTTCTCGATGA 1968 0.4782 MLPQKFTVLITLFLVLLPLVKPDLDSERAALLVLRSAVGGRTLLWNVTRQSPCNWAGVQCEHDHVVELHLPGVALSGQLPTGVFGNLTHLRTVSLRFNALTGRLPSDLASCVDLRNLYLQRNLLSGEIPEFLVRLPDLVRLNLASNNFSGEIPLGFNKLIRLKTLFLENNQLSGSIPSMDTLKLEQFNVSNNLLNGSVPTKLQTFSEDSFLGNSLCGKPLKLCPGDGTGTPPAGEIENNEGNKKKKKLSGGAIAGIVVGSAVCLLLILFVLILLCRKKSSKNTSSVDTATVKQPDTEISGEKPVSDVENDGHSNGFSVAAAAAAAMTGNGKAEANSAGAKKLVFFGNSPKVFDLEDLLRASAEVLGKGTFGTAYKAVLEVGPAVAVKRLRDVTVSEKEFKEKIEAVGAMDHENLVPLRAYYFSRDEKLLVYDYMPVGSLSALLHGNKGAGRTPLNWEIRSGIALGAARGIEYLHSQGPNVSHGSIKSSNILLTKSYDARVSDFGLAHLVGPSSTPNRVAGYRAPEVTDPRRVSQKADVYSFGVLLLELLTGKAPTHALLNEEGVDLPRWVQSVVREEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAAQYPDKRPSMSEVTKRIEELRRSSLKEDQDQTQQPDLINNIDDVSSR 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1454 655 FunFam Probable inactive receptor kinase At1g48480 434 637 - -
Glsi12g1454 655 Gene3D Ribonuclease Inhibitor 183 223 IPR032675 -
Glsi12g1454 655 ProSiteProfiles Leucine-rich repeat profile. 161 183 IPR001611 GO:0005515
Glsi12g1454 655 FunFam Probable inactive receptor kinase RLK902 24 180 - -
Glsi12g1454 655 Gene3D Phosphorylase Kinase; domain 1 325 433 - -
Glsi12g1454 655 ProSitePatterns Protein kinases ATP-binding region signature. 365 387 IPR017441 GO:0005524
Glsi12g1454 655 MobiDBLite consensus disorder prediction 284 310 - -
Glsi12g1454 655 Gene3D Ribonuclease Inhibitor 24 180 IPR032675 -
Glsi12g1454 655 Pfam Leucine rich repeat N-terminal domain 25 60 IPR013210 -
Glsi12g1454 655 SUPERFAMILY L domain-like 45 203 - -
Glsi12g1454 655 Gene3D Transferase(Phosphotransferase) domain 1 434 653 - -
Glsi12g1454 655 ProSiteProfiles Protein kinase domain profile. 359 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1454 655 CDD STKc_IRAK 365 628 - -
Glsi12g1454 655 FunFam pollen receptor-like kinase 1 328 433 - -
Glsi12g1454 655 MobiDBLite consensus disorder prediction 631 655 - -
Glsi12g1454 655 PANTHER OS05G0588300 PROTEIN 8 635 - -
Glsi12g1454 655 Pfam Protein kinase domain 362 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1454 655 MobiDBLite consensus disorder prediction 638 655 - -
Glsi12g1454 655 SUPERFAMILY Protein kinase-like (PK-like) 363 625 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1454 Glsi-ChrGlsi12 31717071 31719602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1454 23 644 Receptor kinase-like Gene Family AT1G48480 66.299 0.0 827
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Glsi12g1454 Pkinase 1.7e-37 CL0016