Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1453 ATGCATACAGTCCACAGTCCCTCTTGCTATGCCAACCTTAATCCCGTATCTAATTTCAATCATATTCCCAACTATTTGGTTCGATCCAATGCGTTAGTTTTCTCCTGCGCGCCTCTGACTGTTAGGTGCTTCGGATTGCGTGCCATTGATTCTGAGTTTTTACCCAAATTTGGTTATTTCCAGGACCCAAGTTCTGTTTTCTCCCGTAGGAAACCCTCGCGCTGTGCAGTAGTCAGAGCCTTCGGAACTAATTACTATTCAACTTTGAAAGTTAGTAGAAATGCTTCTTTGCAAGAGATTAAGAGCGCTTACAGAAAACTAGCCCGTCAGTACCATCCAGATATGAACAAGAGCCCGGGGGCAGAAGAGAAATTCAAGGAGATAAGTGCAGCATATGAGGTTCTATCAGATGATGAGAAAAGATCTTTATATGATCGCTTTGGTGAGGCAGGTCTACAAGGAGAAAATGGAGCGTCAGCTGGTGCTTCAGGGGTTGATCCTTTTGACTTATTTGATACATTCTTCGGCGGTTCAGACAGTCTATTTGGAGGTGGTGATGAACTAGGAGGCATCAACTTCAATTTGAGAAACAATAGAAAACGTGGTCTTGATATTCGGTATGACCTTCATTTGAGCTTTGAAGAATCAATTTTTGGAGGACGGAGAGAAATTGAAGTTTCTGGTTTCCAGACGTGTAGTGATTGTGATGGTACAGGAGCTAAATCAAGGAATTGCATTAAACCATGCACAAATTGTGGTGGCAGAGGAGGAGAGATGAAAAGTCAAAAAACACCCTTTGGAATAATGTCTCAGGTTTCAACCTGCTCTAAGTGCAGTGGTCTTGGCAAGATAATCACTGATCACTGTCGAAGGTGTGGTGGCAGTGGTCAAGTGCAGTCTAAACAAACAATGGAAGTGGTCATTCCTCCTGGTGTTAATGATGGAGCCACGGTGCAAATTCGAGGAGAAGGGAATGTTGATAAGAATAGGGGTATCGCTGGTAATCTTTATATAGTCATCCATGTAGATGAAAAGCATGGAGTTTGGAGAGATGGTATTCATTTGTACTCAAAGCTTGATATTGACTTCACAGAGGCAATACTGGGGTCCGTTAAAAAGGTAGAAACTATTGAAGGTTTAAGGGATCTCCAAATTCCTTCTGGGATTCAACCTGGGGATTCAGTAAAGTTGTCACATTTGGGAGTTCCTGACATGAATAAACCATCTGTTCGAGGGGATCATTACTTCATTGTGAATGTTATAATTGCAAAAAATATAAGTGATGCTGAACGTGTACTTGTGGAGGAATTGGCTTCACTAAGAGCAGCTGCCAAAGAGGATTCTCTTTCTTCTAATGACGTTGGGATACCTAAAGGAAAATTTAGTGAATTCAGAAAGAGGAATCCTAAAGGTCGTCCAAGCATGGGAATCAAACATGACTCTCTATGGAGATCTATCAAGACCTTCTTAAGGGGAGGACAGTCTGAAGAAAGGTTTGCATCAATTAGCATGGATTCATTAACTTCATTGTGGAGATTTGGCAAGCCAAACCCATCAGTCCCAAATACCTTTTTGGTTGCTCTCATTATAACTTGTATTTTTGCCTATATAGCAAAGTTTAATTACTCTTTATTTCAGAAAAGAACCCCGTCCTCCATTAATAGAACCCCAAGTGAAAAACAGTGGGTAATGCTAAGCTACGCTGCTGGTGCTGAAGCCATAGTGCTTCTTCTCCTCACCCTCCCTGGTCTCGGCCCCCTTCGCAAGGGTCTTATCTCTGTCACCAGAAACCTCCTTAGACCCTTGGCTTCGATTGTTCCGTTCTGTCTCTTCTTGCTGATGGACATTTATTGGAAGTACGAGACAAGGCCCTCTTGTGAATCCCTCGACTCTTGCACTCCATCTGAGCGCCTTCGTTATCAGAAGTCCATAATGAAGAGTCAGCGCAATGCCCTTTTGATCGCTGCGGCTCTGATATTTTACTGGCTTTTGTACTCGGTTACTGGCCTTGTGGTTCGGGTTGAGCAGCCGAACTATCATGTGGAGAAGTTGAAGAAGGATTCAGATTGA 2070 0.4285 MHTVHSPSCYANLNPVSNFNHIPNYLVRSNALVFSCAPLTVRCFGLRAIDSEFLPKFGYFQDPSSVFSRRKPSRCAVVRAFGTNYYSTLKVSRNASLQEIKSAYRKLARQYHPDMNKSPGAEEKFKEISAAYEVLSDDEKRSLYDRFGEAGLQGENGASAGASGVDPFDLFDTFFGGSDSLFGGGDELGGINFNLRNNRKRGLDIRYDLHLSFEESIFGGRREIEVSGFQTCSDCDGTGAKSRNCIKPCTNCGGRGGEMKSQKTPFGIMSQVSTCSKCSGLGKIITDHCRRCGGSGQVQSKQTMEVVIPPGVNDGATVQIRGEGNVDKNRGIAGNLYIVIHVDEKHGVWRDGIHLYSKLDIDFTEAILGSVKKVETIEGLRDLQIPSGIQPGDSVKLSHLGVPDMNKPSVRGDHYFIVNVIIAKNISDAERVLVEELASLRAAAKEDSLSSNDVGIPKGKFSEFRKRNPKGRPSMGIKHDSLWRSIKTFLRGGQSEERFASISMDSLTSLWRFGKPNPSVPNTFLVALIITCIFAYIAKFNYSLFQKRTPSSINRTPSEKQWVMLSYAAGAEAIVLLLLTLPGLGPLRKGLISVTRNLLRPLASIVPFCLFLLMDIYWKYETRPSCESLDSCTPSERLRYQKSIMKSQRNALLIAAALIFYWLLYSVTGLVVRVEQPNYHVEKLKKDSD 689
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1453 689 Gene3D - 232 296 - -
Glsi12g1453 689 SUPERFAMILY Chaperone J-domain 83 186 IPR036869 -
Glsi12g1453 689 PRINTS DnaJ domain signature 140 159 IPR001623 -
Glsi12g1453 689 PRINTS DnaJ domain signature 104 119 IPR001623 -
Glsi12g1453 689 PRINTS DnaJ domain signature 86 104 IPR001623 -
Glsi12g1453 689 PRINTS DnaJ domain signature 120 140 IPR001623 -
Glsi12g1453 689 SUPERFAMILY HSP40/DnaJ peptide-binding domain 199 342 IPR008971 GO:0006457|GO:0051082
Glsi12g1453 689 Hamap Chaperone protein DnaJ [dnaJ]. 81 467 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Glsi12g1453 689 Gene3D DnaJ domain 82 183 IPR036869 -
Glsi12g1453 689 ProSiteProfiles Zinc finger CR-type profile. 219 301 IPR001305 GO:0031072|GO:0051082
Glsi12g1453 689 CDD DnaJ 84 137 IPR001623 -
Glsi12g1453 689 Gene3D - 202 338 - -
Glsi12g1453 689 FunFam Molecular chaperone DnaJ 224 301 - -
Glsi12g1453 689 Pfam DnaJ C terminal domain 205 421 IPR002939 -
Glsi12g1453 689 CDD DnaJ_zf 232 296 IPR001305 GO:0031072|GO:0051082
Glsi12g1453 689 CDD DnaJ_C 204 426 - -
Glsi12g1453 689 Pfam DnaJ domain 84 145 IPR001623 -
Glsi12g1453 689 Gene3D - 349 440 - -
Glsi12g1453 689 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 219 299 IPR036410 -
Glsi12g1453 689 SMART dnaj_3 83 140 IPR001623 -
Glsi12g1453 689 Pfam DnaJ central domain 232 296 IPR001305 GO:0031072|GO:0051082
Glsi12g1453 689 ProSiteProfiles dnaJ domain profile. 84 148 IPR001623 -
Glsi12g1453 689 ProSitePatterns Nt-dnaJ domain signature. 125 144 IPR018253 -
Glsi12g1453 689 FunFam Chaperone protein dnaJ A6 chloroplastic 81 187 - -
Glsi12g1453 689 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 65 442 - -
Glsi12g1453 689 SUPERFAMILY HSP40/DnaJ peptide-binding domain 350 431 IPR008971 GO:0006457|GO:0051082
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Glsi12g1453 Glsi-ChrGlsi12 31697928 31705826 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1453 68 145 C2H2 Transcription Factor Family AT1G74250 40.476 1.04e-07 53.1