Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1442 ATGACGTCGGAAACCAGAGTCCCAAAATTTATACAAATCAAAAGCTCAAATACAGCACACAGGGAACACCAAGATAGAGAGAAAGAAGATACAGAGAGAAAAGCAAAGGCTCGTAGGGTCAGAAAAAGATGGATTTCCTCTGTAATATCGAGGGAGACAAGAACGAAGAATAGTGTCGTACCTTATGTCGGTGCCAATGAAGTCGGGGTCTTAACGCCGGAGTATTTCCTGCTTTGCCCCAGAACTTCAGAGAAGAAAGACGGGCGTGGGTATTTGGTTGCCGAGAATATGCTGGACATGTTAGGTTCTGAAATTTTAATTGAGAGGGAAAAGAGAAAATTCCTGAGAGCTGTTATTCGTAGAAATATGCATGACTTAGGTTGTGATAATCTCAGTTCAGTGCTGGCGGAGACGAGCTTTGTGTGTGAAAGATCACATACAATGAGCTTGCATGTCCGACAAGAACGGAGGGATAGGTCCAGGGTTCCTGTCCAAGGTCCTCGTCAGGAATGGGTTCCTAGAGCATCCGCCTCCGCCGCTGCCGCCACCACCACATCCACCAACAACAACAACCCGCCATGTAATGTGCAGTCAGATCAAAATGGTGATGCCGGTTGCTCAAATAAAAGTGTTGCTCCCCCAGCAAGCCAGCATAGAAGTAATCATGGTTCAAGGGGTTACACAAGTCGTCCTTTGAATCAGAGAAGGGAAAGGGAAAAGGAAAGGAGTGAGAATCAGGTGGGGAAAGGAGCGAGGGACTCCAATTTGCCTCAACTGTTGCAAGAGATTCAGGAGAAGCTCATTAAAAGTTCTGTGGAATGCATGATATGCTATGACATGGTCCGTAGATCTGCACCTATCTGGTCTTGTACCAGCTGCTACTCTATCTTCCACCTGAACTGTATAAAGAAGTGGGCTCGTGCACCCACTTCTGTTGATCTGTCTGCTGAAAAGAATCAAGGATTTAATTGGCGGTGTCCTGGTTGTCAGTCTGTACAGCTAACATCGTCAAGGGAGATTAAGTATGTATGCTTTTGTGGAAAGAGGCCAGACCCACCGTCTGATTTGTATTTGACACCGCATTCTTGTGGAGAACCATGTGGGAAGCCTCTCGAGAGGGAGGTGTTGGTTACTGGAGGGAGACAGAGTAAGGAGGATCTTTGCCCTCACGTTTGTGTATTGCAATGCCATCCAGGTCCATGCCCTCCTTGTAAAGCATTTGCACCGCCACGTTTGTGTCCTTGTGGGAAGAAAACAATTACCACACGTTGCTCTGAACAGCCCTCTGTTCTTACCTGCGGTCAGCGATGTGATAAGCTTCTTGAGTGTGGGCGTCATCGGTGTGAACGCATTTGTCATGTGGGTCCTTGTGATCCTTGTCAGGTTCTAATCAATGCCTCTTGCTTCTGCAATAATAAGTTGGAGGTTATTCAATGCGGGGACATGACTGTGAAGGGTGAAATCAAAGCAAAAGGTGGTGTTTTTTCATGTGGTTCTAATTGTGGAAAGAAACTTAGTTGTGGTAATCATATTTGTAGTGAGATTTGTCATCCAGGCAATTGTGGGGAGTGTGACTTTTTACCAAGCCGGATTAAGACATGCTGTTGCGGGAAAACAAGATTGGAGGAGGAACGACAGAGTTGTCTGGATCCAATACCAACCTGTGCACAATTATGTGACAAGCCCCTTCCTTGTGGGATGCATCATTGTAGAGATGTATGTCATGCTGGGGATTGTCCACCTTGTTTGTTTGAAGTCTCCCAAAAGTGTAGGTGCGGCTCAACTTCTCGGACTGTGGAGTGCTATAAGACAACGAGGGAGAATGAGAAATTTACTTGTGAAAAGCCTTGTGGGCAAAAAAAGAACTGTGGAAGGCATCGATGCAGTGAACGGTGCTGTCCACTCTCTAATCCAAATAATCATCTACGTGGGGAATGGGATCCTCACTTTTGTTCCATGCCTTGCGGAAAGAAGCTAAGGTGTGGCCAACATGCATGCGAATCCCTGTGTCATAGTGGTCATTGCCCACCTTGTCTTGAAACTATCTTCACTGATTTGACATGTGCTTGTGGTAGGACTTCAATCCCTCCTCCATTGCCTTGTGGTACGCCTCTTCCCTCATGTCAGCTTCCTTGTTCAGTTCCTCAGCCTTGTGGCCATTCAGCCTCCCACAGCTGCCATTTTGGAGATTGTCCACCTTGTTCGGTGCCTGTAGCAAAAGAATGTATTGGTGGGCATGTGGTTCTTAGGAATATACCTTGTGGGTCAAAGGATATTAGATGTAATAAGCTTTGTGGGAAGACCAGACGGTGTGGTTTACATGCCTGTGGCAGAATATGTCACCCTCCACCTTGTGATAATCTGTCTGGTTGTGACCAAGGTTTCCGAGCATCTTGTGGTCAAACATGTGGTGCTCCAAGGAGAGACTGCAGGCATACATGTATAGCTGCATGTCACCCTTCGTCTCCATGCCCCGATATAAGATGTGAATACCCTGTTACAATTACTTGCTCATGTGGCCGTATAACAGCAAATGTTCCTTGTGGTGCTGGTGGTGGTAGTGGTAATTATAATGCTGATTCCATACACGAAGCTTCCATAATTCAAAAGTTGCCTGTGGCACTTCAACCAGTGGAATCAAATGGCAAGTTGATTCCCCTTGGACAAAGAAAGCTTATATGTGATGATGAATGTGCTAAGTTGGAGCGTAAAAGGTTTCTTGCTGATGCTTTTGATGTTAATACTCCAAATTTGGACTCTCTTCATTTTGGTGAGAACTCTGTTGCTTCTGAATTGCTTTCAGACATGTTCCGGCGAGATCCTAAGTGGGTTTTATCTGTGGAGGAGAGATGCAAATTTTTAGTTCTTGGCAAAAGTAGAGGAGCTACACATGGTTTAAAAGTCCATGTTTTCTGTCCTATGCTGAAGGATAAGAGAGATGCAGTGAGGGTTATTGCTGAGAGATGGAAGCTTGCAGTGAATGCTGCTGGTTGGGAGCCAAAGCGTTTTGTCATAGTTCATGTTACCCCGAAGTCAAAGGCGCCTGCACGTGTTCTTGGGGTTAAGGGTACCCCAACTGTAAATGTGCCCCTTCCTCCAACATTTGATTCTTTGGTAGATATGGACCCTCGGCTTGTTGTCTCCTTTCCAGACTTACCAAGGGATGCTGATATAAGTGCATTGGTATTGAGGTTTGGCGGTGAATGCGAACTTGTTTGGTTGAATGACAAAAATGCATTGGCTGTCTTTAATGATCCTGGCCGAGCTGCAACTGCAATGAGAAGGTTGGATCATGGAACAGTTTATCATGGAGCTGTTGTGGTTGTCCCGAATGTTGGGGCATCAGCGGCATCTTCAGCTATCAATGCCTGGGGAGGAGCTGGGATGGTGAACGAAGGGGGAGCACTAGCAGCATTGAAGGGTAATTCATGGAAAAAGGCTGTGGTTCAACAGCCTGGTTGGAAAGAGGATTCTTGGGGTGATGAAGAATGGGCTATTGGTTCTGCTGACATCCAGCCTTCTGTTTGGACGAAAGAAGCACCAAAAGCCCCAATTGCTGCTTCATTAAATCGGTGGAGTGTTCTAGACCAAGAATCACGTTCAAGTTCATCTGTTGCGACCATCAGAACCGAAGTTTCTGGGAAACATTCAGCAAGTTCATCGGCCGTACCTAAGTTAGGATCTGATGCAGGTGGCCCAATTCCAGAAGGACAGCATGGAGGGAACGTTAATGCATCAGAAGTTTCCGAAGTAGTTGATGATTGGGAGAAAGCTTATGAATGA 3783 0.4607 MTSETRVPKFIQIKSSNTAHREHQDREKEDTERKAKARRVRKRWISSVISRETRTKNSVVPYVGANEVGVLTPEYFLLCPRTSEKKDGRGYLVAENMLDMLGSEILIEREKRKFLRAVIRRNMHDLGCDNLSSVLAETSFVCERSHTMSLHVRQERRDRSRVPVQGPRQEWVPRASASAAAATTTSTNNNNPPCNVQSDQNGDAGCSNKSVAPPASQHRSNHGSRGYTSRPLNQRREREKERSENQVGKGARDSNLPQLLQEIQEKLIKSSVECMICYDMVRRSAPIWSCTSCYSIFHLNCIKKWARAPTSVDLSAEKNQGFNWRCPGCQSVQLTSSREIKYVCFCGKRPDPPSDLYLTPHSCGEPCGKPLEREVLVTGGRQSKEDLCPHVCVLQCHPGPCPPCKAFAPPRLCPCGKKTITTRCSEQPSVLTCGQRCDKLLECGRHRCERICHVGPCDPCQVLINASCFCNNKLEVIQCGDMTVKGEIKAKGGVFSCGSNCGKKLSCGNHICSEICHPGNCGECDFLPSRIKTCCCGKTRLEEERQSCLDPIPTCAQLCDKPLPCGMHHCRDVCHAGDCPPCLFEVSQKCRCGSTSRTVECYKTTRENEKFTCEKPCGQKKNCGRHRCSERCCPLSNPNNHLRGEWDPHFCSMPCGKKLRCGQHACESLCHSGHCPPCLETIFTDLTCACGRTSIPPPLPCGTPLPSCQLPCSVPQPCGHSASHSCHFGDCPPCSVPVAKECIGGHVVLRNIPCGSKDIRCNKLCGKTRRCGLHACGRICHPPPCDNLSGCDQGFRASCGQTCGAPRRDCRHTCIAACHPSSPCPDIRCEYPVTITCSCGRITANVPCGAGGGSGNYNADSIHEASIIQKLPVALQPVESNGKLIPLGQRKLICDDECAKLERKRFLADAFDVNTPNLDSLHFGENSVASELLSDMFRRDPKWVLSVEERCKFLVLGKSRGATHGLKVHVFCPMLKDKRDAVRVIAERWKLAVNAAGWEPKRFVIVHVTPKSKAPARVLGVKGTPTVNVPLPPTFDSLVDMDPRLVVSFPDLPRDADISALVLRFGGECELVWLNDKNALAVFNDPGRAATAMRRLDHGTVYHGAVVVVPNVGASAASSAINAWGGAGMVNEGGALAALKGNSWKKAVVQQPGWKEDSWGDEEWAIGSADIQPSVWTKEAPKAPIAASLNRWSVLDQESRSSSSVATIRTEVSGKHSASSSAVPKLGSDAGGPIPEGQHGGNVNASEVSEVVDDWEKAYE 1260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1442 1260 MobiDBLite consensus disorder prediction 149 256 - -
Glsi12g1442 1260 MobiDBLite consensus disorder prediction 1203 1224 - -
Glsi12g1442 1260 CDD NF-X1-zinc-finger 799 850 - -
Glsi12g1442 1260 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 149 1162 IPR034078 GO:0003700
Glsi12g1442 1260 MobiDBLite consensus disorder prediction 1 15 - -
Glsi12g1442 1260 MobiDBLite consensus disorder prediction 231 248 - -
Glsi12g1442 1260 MobiDBLite consensus disorder prediction 16 36 - -
Glsi12g1442 1260 ProSiteProfiles Zinc finger RING-type profile. 274 330 IPR001841 -
Glsi12g1442 1260 CDD NF-X1-zinc-finger 363 426 - -
Glsi12g1442 1260 CDD NF-X1-zinc-finger 497 542 - -
Glsi12g1442 1260 Pfam NF-X1 type zinc finger 771 786 IPR000967 GO:0005634|GO:0008270
Glsi12g1442 1260 Pfam NF-X1 type zinc finger 661 678 IPR000967 GO:0005634|GO:0008270
Glsi12g1442 1260 Pfam NF-X1 type zinc finger 443 461 IPR000967 GO:0005634|GO:0008270
Glsi12g1442 1260 Pfam NF-X1 type zinc finger 507 524 IPR000967 GO:0005634|GO:0008270
Glsi12g1442 1260 Pfam NF-X1 type zinc finger 565 582 IPR000967 GO:0005634|GO:0008270
Glsi12g1442 1260 Pfam NF-X1 type zinc finger 718 735 IPR000967 GO:0005634|GO:0008270
Glsi12g1442 1260 Pfam NF-X1 type zinc finger 623 634 IPR000967 GO:0005634|GO:0008270
Glsi12g1442 1260 Pfam NF-X1 type zinc finger 803 828 IPR000967 GO:0005634|GO:0008270
Glsi12g1442 1260 Pfam NF-X1 type zinc finger 390 405 IPR000967 GO:0005634|GO:0008270
Glsi12g1442 1260 CDD NF-X1-zinc-finger 708 756 - -
Glsi12g1442 1260 MobiDBLite consensus disorder prediction 178 230 - -
Glsi12g1442 1260 CDD RING-CH-C4HC3_NFX1-like 273 330 - -
Glsi12g1442 1260 MobiDBLite consensus disorder prediction 1 36 - -
Glsi12g1442 1260 SMART znfxneu3 507 526 IPR000967 GO:0005634|GO:0008270
Glsi12g1442 1260 SMART znfxneu3 388 406 IPR000967 GO:0005634|GO:0008270
Glsi12g1442 1260 SMART znfxneu3 718 736 IPR000967 GO:0005634|GO:0008270
Glsi12g1442 1260 SMART znfxneu3 661 680 IPR000967 GO:0005634|GO:0008270
Glsi12g1442 1260 SMART znfxneu3 810 831 IPR000967 GO:0005634|GO:0008270
Glsi12g1442 1260 SMART znfxneu3 443 462 IPR000967 GO:0005634|GO:0008270
Glsi12g1442 1260 SMART znfxneu3 771 793 IPR000967 GO:0005634|GO:0008270
Glsi12g1442 1260 SMART znfxneu3 565 584 IPR000967 GO:0005634|GO:0008270
Glsi12g1442 1260 MobiDBLite consensus disorder prediction 1203 1260 - -
Glsi12g1442 1260 SUPERFAMILY RING/U-box 263 334 - -
Glsi12g1442 1260 CDD NF-X1-zinc-finger 555 603 - -
Glsi12g1442 1260 CDD NF-X1-zinc-finger 651 703 - -
Glsi12g1442 1260 ProSiteProfiles Zinc finger PHD-type profile. 271 332 IPR019787 -
Glsi12g1442 1260 CDD NF-X1-zinc-finger 433 481 - -
Glsi12g1442 1260 MobiDBLite consensus disorder prediction 149 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1442 Glsi-ChrGlsi12 31656579 31662882 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Glsi12g1442 zf-NF-X1 1.9e+02 No_clan