Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1439 ATGGCACTTGTCCGCGACCGCCGCCCCATCAATCTCCGCCTCCCTCTCCCGCCGCCCTCCGAGCGCCGCCCTCGTTTCCCTCTCCCCCTCCCTCCCACTTCCACATGCCCCCCCACCTCCAAAAACTCCTCGTCCGTTGCCGCCATCGCTCCTAACGACATCGAAAAGCTTCAAGTTCTCGGCCATGGCAACGGAGGCACCGTTTACAAAGTCCGCCACAAGCGCACCTCTGCCATCTACGCTCTCAAGGTCATCCACAGCGACTCTGATCCAATGATCCGCCGGCAAGTCCTAAGGGAAATGGATATCCTCCGCCGAACGGACTCGCCTCACGTCGTACAGTGTCACGGGTTTTTTGAGAAGCCGTCCGGCGACGTAGCGATTGTGATGGAGTATATGGATTTGGGTACGCTAGACACGTTGCTGAAGAAGAATGGTCCTTTCTCGGAAGCCCAACTCGCGGCGGTGGCGCGTCAGGTTCTGAACGGGCTCAGTTACCTCCACGCCCATAAGATTATCCACCGTGATATCAAACCCTCGAACCTTTTGGTGAATCGGAATATGGAAGTGAAAATCAGTGATTTTGGAGTCAGTAAGATCATGTGCCGGACATTAGACGCGTGCAATTCATACGTCGGAACATGCGCGTACATGAGCCCGGAACGGTTCGACCCGGATAGGTATGGGGGGAATTACAACGGGTATGCAGGAGACATATGGAGTTTGGGTCTGACCTTGTTTGAACTGTATGTGGGCCACTTCCCGTTTCTGCCAGCGGGTCAGAGACCCGACTGGGCGACCTTGATGTGTGCGATTTGTTTCGGAGACCCGCCGAGCTTGCCAGAGAAATGTTCGAAGGAGTTTCGAAACTTCATAGAGTGTTGCTTGAAGAAGGAGTCAAGCGAGAGATGGAGTGCGGCTCAGCTTTTGACCCACCCGTTTCTGAGATAA 951 0.5499 MALVRDRRPINLRLPLPPPSERRPRFPLPLPPTSTCPPTSKNSSSVAAIAPNDIEKLQVLGHGNGGTVYKVRHKRTSAIYALKVIHSDSDPMIRRQVLREMDILRRTDSPHVVQCHGFFEKPSGDVAIVMEYMDLGTLDTLLKKNGPFSEAQLAAVARQVLNGLSYLHAHKIIHRDIKPSNLLVNRNMEVKISDFGVSKIMCRTLDACNSYVGTCAYMSPERFDPDRYGGNYNGYAGDIWSLGLTLFELYVGHFPFLPAGQRPDWATLMCAICFGDPPSLPEKCSKEFRNFIECCLKKESSERWSAAQLLTHPFLR 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1439 316 Gene3D Phosphorylase Kinase; domain 1 34 134 - -
Glsi12g1439 316 ProSiteProfiles Protein kinase domain profile. 54 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1439 316 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Glsi12g1439 316 ProSitePatterns Protein kinases ATP-binding region signature. 60 83 IPR017441 GO:0005524
Glsi12g1439 316 Pfam Protein kinase domain 55 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1439 316 MobiDBLite consensus disorder prediction 12 36 - -
Glsi12g1439 316 CDD PKc_MAPKK_plant_like 52 316 - -
Glsi12g1439 316 SUPERFAMILY Protein kinase-like (PK-like) 50 316 IPR011009 -
Glsi12g1439 316 FunFam Mitogen-activated protein kinase 2 135 316 - -
Glsi12g1439 316 Gene3D Transferase(Phosphotransferase) domain 1 136 316 - -
Glsi12g1439 316 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 40 316 - -
Glsi12g1439 316 PRINTS Tyrosine kinase catalytic domain signature 284 306 IPR001245 GO:0004672|GO:0006468
Glsi12g1439 316 PRINTS Tyrosine kinase catalytic domain signature 166 184 IPR001245 GO:0004672|GO:0006468
Glsi12g1439 316 PRINTS Tyrosine kinase catalytic domain signature 237 259 IPR001245 GO:0004672|GO:0006468
Glsi12g1439 316 PRINTS Tyrosine kinase catalytic domain signature 130 143 IPR001245 GO:0004672|GO:0006468
Glsi12g1439 316 SMART serkin_6 54 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1439 316 FunFam Mitogen-activated protein kinase kinase 31 130 - -
Glsi12g1439 316 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1439 Glsi-ChrGlsi12 31637176 31638126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1439 1 316 MAP Kinase Kinase Gene Family AT1G73500 64.353 8.81e-144 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Glsi12g1439 Pkinase 1.2e-67 CL0016