Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1436 ATGGTATTAGGATGGAGAAGAAGGAAGAACAGCCGCCGCCCCGCTGGCAAACCCATCACGGAGCTGGTGATTCCCAACAATTTCAGGTGCCCAGTTTCGCTTGATTTGATGAAAGATCCTGTCACATTGTCTACCGGAATTACATATGATCGAGAAAGCATCGAAAGGTGGCTACAAGACGGGAATTTTACATGCCCTGTCACCAATCAGATTCTCAGGAACTTTGATCTGATTCCCAATCATACGCTTAGGATAATGATTCAAGATTGGTGTGTGGAAAATCGACAATATGGGGTTGAAAGGATTCCAACTCCAAGAATACCCATTACGCCAATTGAAGTTGCAGAGATTCTTCTGCTTGTGAAGGCCTCTGCTAGACGTTTGGATCAGTATGGGTGCCTTGAATTGGTTCAGAAAATCGAGAGGTGGGGTGCAGAGAGTGAGAGAAACAGAAAGTGTATAGTGGAGAATGGAGCTAGCGGTGCATTGGCCTCTGCTTTTGATGCATTTGCAAATGATTCTGTTGAGAACAACTTGAGTGTGTTAGAAGAGATTTTATCTGCCCTCAATGGGATGTTTCCACTTCAAATGGAAGCCGAGAAATCTTTGGGGTCTGTGGCTTCGTTACGTTGCATGGTTTGGTTTCTGAAGCACCAGGATCTTGCAGGGAAAGAGAAGTCTATTGTTGCTCTCGGGGAGCTTCTTTCTTTTGGTGATCAGCGGCATTCGGAGGCACTGGCAGATATTGAAGGAGTCAACGAACTATTGGTGGATTTCATTAACAAAAGAATCAGTCCAACCATTACAAAAGCTTCATTAGCTGTAGTTTTTTACTTGGTCTCATCGTCATGTTCTTCAAGTAAGAAGATGCAATTGGCATTCATCAAACTGGGGTTGGTTTCTTCATTGCTGGAGATTCTCATCGACTCAGAAAGAAGCCTTTCTGAGAAGGCTCTGGGTATTTTTGACTCACTCTGCGGTTGTGAAGAAGGTAGAGAAAAAGCTTACGGTAATGCTCTAACAATTCCCGTATTGGTGAAGAAAATATTGCGAATTTCAGCATTGGCCACAGATTACTCTGTTTCCGGTATATGGAAGCTTTGCAAGTATGGAGAGAAGGATGAAGGAAGAGTTCTTGTAGAGGCCCTACAAGTGGGTGCCTTTCAGAAGCTCTTGCTAGTATTACAGGTTGGTTGTGACGACGATACAAAGGTGAAAGCAACTGAGCTTCTCAAACTGTTGAATCCTTACAGGACTGGCTTGGAATGCATAGACTCAGATTTCAAAAATCTCAAGAGATCATTTTAA 1308 0.4343 MVLGWRRRKNSRRPAGKPITELVIPNNFRCPVSLDLMKDPVTLSTGITYDRESIERWLQDGNFTCPVTNQILRNFDLIPNHTLRIMIQDWCVENRQYGVERIPTPRIPITPIEVAEILLLVKASARRLDQYGCLELVQKIERWGAESERNRKCIVENGASGALASAFDAFANDSVENNLSVLEEILSALNGMFPLQMEAEKSLGSVASLRCMVWFLKHQDLAGKEKSIVALGELLSFGDQRHSEALADIEGVNELLVDFINKRISPTITKASLAVVFYLVSSSCSSSKKMQLAFIKLGLVSSLLEILIDSERSLSEKALGIFDSLCGCEEGREKAYGNALTIPVLVKKILRISALATDYSVSGIWKLCKYGEKDEGRVLVEALQVGAFQKLLLVLQVGCDDDTKVKATELLKLLNPYRTGLECIDSDFKNLKRSF 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1436 435 SUPERFAMILY RING/U-box 21 100 - -
Glsi12g1436 435 Pfam U-box domain 24 95 IPR003613 GO:0004842|GO:0016567
Glsi12g1436 435 SMART Ubox_2 27 90 IPR003613 GO:0004842|GO:0016567
Glsi12g1436 435 SUPERFAMILY ARM repeat 146 414 IPR016024 -
Glsi12g1436 435 ProSiteProfiles U-box domain profile. 23 97 IPR003613 GO:0004842|GO:0016567
Glsi12g1436 435 CDD RING-Ubox_PUB 25 77 IPR045210 -
Glsi12g1436 435 Gene3D - 131 424 IPR011989 -
Glsi12g1436 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 101 IPR013083 -
Glsi12g1436 435 FunFam RING-type E3 ubiquitin transferase 24 95 - -
Glsi12g1436 435 PANTHER WDSAM1 PROTEIN 20 415 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1436 Glsi-ChrGlsi12 31613634 31614941 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1436 5 435 U-box Gene Family AT5G37490 45.169 4.11e-117 347