LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi12g1428	ATGCCCCAGAATAGGATTTTCAATGACCCATCATCGAATCCGATTCCTGATCTTGCCCTGCACATTAGCCTTCCAAACAGTGCTCCTTCTTCAATTTGCACCGGCGCCCATGAAGAAGGGGATTCTTCCTTTGATATATGGCGAACAGATGTTGATGGCCTCAAATCCCACAGTGAGAGCTCTATCAGAGGCAGCCCACAAGCAGACACAGAGCTCTCTCTGGCCAATCCCACAAGTGCCTCTGAGGTCGAGAGCCCCTGGAGGAGAAACTTCGTTAGAGGCAGAGAAGAAGTTGCAGCTAGGCAAACAAATCATGGGGTTTCAGAGGGATTAAGACCCATCAAAGGAATCCCACTTTACAATAACTGTTCGTTTTCCTTTTCTCCTTTGGACAACAATTTCATAGGGAGGGACTCCAAGATTTCTCTATACCCAGTTTCATATCCTTCTTGTTCTGCTATTAATTCGGGTTCTTATAGGCCTTATGATAGTATTGGGGGTGTAGAACCAATCTCAAGGTTTAATGGGATAACCATGGAGAGTCTAAGACCGGGGCAGCAGTTTCAGTACTTGAATCAGCAGCAGCAGCAGCAGCAGTTTGGGATTGGAGCTTCTGATTTCTCAAACGGATTTATGAGGTCGAGAATATTGCCAAGACTGCAGAATAAGAGGAACATGAGGGCTCCAAGAATGCGTTGGACTAGTTCTCTTCATGCTCGATTTGTCCATGCTGTTGAGCTCCTTGGGGGCCATGAAAGGGCTACACCAAAGTCAGTTTTGGAGCTCATGGATGTCAAAGATCTAACTCTAGCTCATGTCAAGAGCCATTTGCAGATGTATCGAACTGTTAAGAACACTGATAAACCTGCAGCTTCCTCAGATGGAGATGGAGACGGAGATGGAGAGGGAGACGAAGATTTCATGACTCTAACGCCACCACTAGTTAATCAAAATGAGAACTGTTTATTACCCATTAAGAGAGGACCTACAAATGCATCTCTAGAGCTTCCGGATATGGGCTACTCTACCAGCAACAGCTTGTGGGGTAATTCTTCCAGTAGAGGAGCATGGACACAAGCTAGTTCCAGAGATCTGGATGGGCTTAGATCAGCAGATATCCTATCATCTCAGCACACAGTTGGGAAACAGTCTCAGGAAAGCAATTTTTTACAGTCAAGAAGCTTCGAGGGTTCAAATCCGGACTCTGAGAATCCAAGCTTGGAGTTCACCTTAGGGAGATCAACTTGGCAAGGCAACGAACATGCCTGA	1269	0.4602	MPQNRIFNDPSSNPIPDLALHISLPNSAPSSICTGAHEEGDSSFDIWRTDVDGLKSHSESSIRGSPQADTELSLANPTSASEVESPWRRNFVRGREEVAARQTNHGVSEGLRPIKGIPLYNNCSFSFSPLDNNFIGRDSKISLYPVSYPSCSAINSGSYRPYDSIGGVEPISRFNGITMESLRPGQQFQYLNQQQQQQQFGIGASDFSNGFMRSRILPRLQNKRNMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKNTDKPAASSDGDGDGDGEGDEDFMTLTPPLVNQNENCLLPIKRGPTNASLELPDMGYSTSNSLWGNSSSRGAWTQASSRDLDGLRSADILSSQHTVGKQSQESNFLQSRSFEGSNPDSENPSLEFTLGRSTWQGNEHA	422

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi12g1428	422	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	229	282	IPR006447	GO:0003677
	Glsi12g1428	422	MobiDBLite	consensus disorder prediction	58	81	-	-
	Glsi12g1428	422	Gene3D	-	228	285	-	-
	Glsi12g1428	422	PANTHER	TRANSCRIPTION FACTOR KAN2-RELATED	16	421	IPR044847	GO:0000976\|GO:0006355\|GO:0010158
	Glsi12g1428	422	Pfam	Myb-like DNA-binding domain	230	281	IPR001005	-
	Glsi12g1428	422	FunFam	Myb family transcription factor	227	285	-	-
	Glsi12g1428	422	SUPERFAMILY	Homeodomain-like	226	283	IPR009057	-
	Glsi12g1428	422	MobiDBLite	consensus disorder prediction	284	312	-	-
	Glsi12g1428	422	MobiDBLite	consensus disorder prediction	377	422	-	-
	Glsi12g1428	422	MobiDBLite	consensus disorder prediction	56	81	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi12g1428	Glsi-ChrGlsi12	31567335	31573529	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi12g1428	15	417	G2-like Transcription Factor Family	AT5G16560	37.647	1.96e-57	192

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GARP-G2-like	Glsi12g1428		None	None	None

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