Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1420 ATGGAAGCAGGAGATATCAGCTCCAATTCTGTTTACAGAGAGTGTCTGAGAAACCATGCAGCCAGCCTCGGGAGCTACGCCACCGATGGCTGCGGCGAGTTCACACTCGACGACACCTCCCCCGCCTCCCTCCAATGCGCTGCCTGCGGCTGCCACCGTAACTTCCACCGCAAACTCACCTACCCCCCACCCCATCGCAGCCGCGCCCGAGAACCTCCAGAACTCACGCCAGACCTTATGGACTATAGCGGCGGCGGCGGCGGAGAAGGGAGGCAGCCCAGCAGCATGTTGGAGTTGGGGGAGGGAGACCGGACGGGGAAGAAGAGGTTCAGGACAAAGTTCACGGCGGATCAGAAGGAGAAGATGCTGGGTTTTGCGGAGAAGTTAGGATGGAAGCTGCAAAGGAAGGATCTTGATGATGAGATAGAGAGGTTCTGCAGAGGAGTAGGGGTGAGCAGGCAAGTTTTCAAGGTGTGGATGCATAACCATAAGAACTCTTCCTCCTCCTCTTCTGCATCTACTGGCAATGCCTCCTCTCTTACTCAGTAA 549 0.5665 MEAGDISSNSVYRECLRNHAASLGSYATDGCGEFTLDDTSPASLQCAACGCHRNFHRKLTYPPPHRSRAREPPELTPDLMDYSGGGGGEGRQPSSMLELGEGDRTGKKRFRTKFTADQKEKMLGFAEKLGWKLQRKDLDDEIERFCRGVGVSRQVFKVWMHNHKNSSSSSSASTGNASSLTQ 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1420 182 Gene3D - 95 171 - -
Glsi12g1420 182 NCBIfam homeobox domain, ZF-HD class 107 165 IPR006455 -
Glsi12g1420 182 FunFam Zinc-finger homeodomain protein 2 95 169 - -
Glsi12g1420 182 MobiDBLite consensus disorder prediction 60 104 - -
Glsi12g1420 182 Pfam ZF-HD protein dimerisation region 11 59 IPR006456 -
Glsi12g1420 182 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 12 59 IPR006456 -
Glsi12g1420 182 MobiDBLite consensus disorder prediction 163 182 - -
Glsi12g1420 182 SUPERFAMILY Homeodomain-like 96 165 IPR009057 -
Glsi12g1420 182 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 10 166 - -
Glsi12g1420 182 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 12 58 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1420 Glsi-ChrGlsi12 31501613 31502161 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1420 12 181 ZF-HD Transcription Factor Family AT2G02540 38.571 1.58e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Glsi12g1420 ZF-HD_dimer 6.2e-25 No_clan