LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi12g1418	ATGTTAGCCAATAACTCTCCTTCCTCGGTTCCCACTTCGGAGCCGTTTTCGTGCGCAGAGAATGGTACCAGTACTAATAAAAGGAAGAGAAGGCCTGCAGGAACACCAGATCCAGATGCTGAGGTGGTGTCCCTCTCGCCAAAGACCTTGTTAGAATCAGATCGTTATGTTTGTGAGATCTGCAACCAGGGATTCCAGAGGGACCAGAACCTTCAGATGCACCGGCGGCGGCACAAGGTGCCGTGGAAGCTGTTGAAAAGGGAGACGCCGGTGGTGAGGAAACGAGTGTTTGTGTGCCCTGAGCCCACCTGTTTGCACCATGACCCTTGCCATGCCCTGGGTGATCTTGTTGGGATAAAGAAGCACTTCAGGAGGAAACACAGCAACCACAAGCAATGGGTCTGCGAGAGATGCTCCAAAGGATATGCAGTGCAGTCCGATTACAAAGCTCATCTCAAAACCTGTGGCACCAGAGGCCATTCTTGCGATTGTGGCCGCGTTTTCTCCAGGGTGGAGAGCTTCATTGAACACCAAGATGCGTGCAATATGGGGCGTCTCCGGCCAGAATCGCAACCACTTCAACCAGCATGCTTGTCTCGAACCGCATCTAGCCCGAGCCCATCAAGCGAAACCAATTTCAGCACAGGTCCCTGGCCAGCAGCTCTGGTAATGCCAAAGCCAACTGATCAGCCCACATTCTTGAACCCTACTGCTGAAACCTCATCCAAGAGCAATAATAAACACTACCCCAACCTGGATCTTCAGCTCTCAACGGCCATCGCATCCAACGCCAACGATGTATCACCTAAGAGAGATGAAACCCATTCGACCCAGTTGCAACTATCAATTGGGTCATCGGAAATCAGCGATAAAAATGAATCAAACAGCTTGAACAATAGAAATAATTCACCCAAGGAGAGCAGCAACAGCAGCGAGAAGCCACCGGGTGCAGCGGTGGCATTGAAGGTTCAAGAGCAAGCTCGTGAGCACTTGAGGATAGCCATGGCAGAGAAGGCCTATGCTGAAGAGGCAAGGAAGCAAGCGAAAAGGCAGATGGAACTTGCGGAGCAAGAATTTAGCAACGCCAAGAGGATTAGACAGCAGGCGCAAGCGGAACTAGACAAAGCTTATGCTTTGAAAGAGCATGCAATTAAGCAGATCAATTCCACTATGCTTCAAATCACTTGCCATGCTTGCAAGCAACAATTTCAAGCGCGAAAAACAACTTTGGCTCCCATTGATGACAACTCTTTGGTATTAGGCTACATGTCGTCTCCTATAGCAACAGAAGGTGGCGAAGTAGACAACAATAATGGGAAAACTACTAACTCCTAA	1335	0.4959	MLANNSPSSVPTSEPFSCAENGTSTNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRPESQPLQPACLSRTASSPSPSSETNFSTGPWPAALVMPKPTDQPTFLNPTAETSSKSNNKHYPNLDLQLSTAIASNANDVSPKRDETHSTQLQLSIGSSEISDKNESNSLNNRNNSPKESSNSSEKPPGAAVALKVQEQAREHLRIAMAEKAYAEEARKQAKRQMELAEQEFSNAKRIRQQAQAELDKAYALKEHAIKQINSTMLQITCHACKQQFQARKTTLAPIDDNSLVLGYMSSPIATEGGEVDNNNGKTTNS	444

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi12g1418	444	Coils	Coil	331	386	-	-
	Glsi12g1418	444	Gene3D	Classic Zinc Finger	118	192	-	-
	Glsi12g1418	444	ProSitePatterns	Zinc finger C2H2 type domain signature.	58	78	IPR013087	-
	Glsi12g1418	444	MobiDBLite	consensus disorder prediction	194	216	-	-
	Glsi12g1418	444	Pfam	Zinc finger, C2H2 type	56	78	IPR013087	-
	Glsi12g1418	444	FunFam	protein indeterminate-domain 12-like	35	103	-	-
	Glsi12g1418	444	SMART	c2h2final6	133	160	IPR013087	-
	Glsi12g1418	444	SMART	c2h2final6	97	127	IPR013087	-
	Glsi12g1418	444	SMART	c2h2final6	56	78	IPR013087	-
	Glsi12g1418	444	MobiDBLite	consensus disorder prediction	1	43	-	-
	Glsi12g1418	444	MobiDBLite	consensus disorder prediction	230	250	-	-
	Glsi12g1418	444	MobiDBLite	consensus disorder prediction	192	250	-	-
	Glsi12g1418	444	Gene3D	Classic Zinc Finger	34	96	-	-
	Glsi12g1418	444	MobiDBLite	consensus disorder prediction	265	319	-	-
	Glsi12g1418	444	ProSiteProfiles	Zinc finger C2H2 type domain profile.	56	78	IPR013087	-
	Glsi12g1418	444	MobiDBLite	consensus disorder prediction	274	314	-	-
	Glsi12g1418	444	MobiDBLite	consensus disorder prediction	1	23	-	-
	Glsi12g1418	444	PANTHER	SERINE/THREONINE-PROTEIN KINASE RIO	17	395	IPR031140	-
	Glsi12g1418	444	SUPERFAMILY	beta-beta-alpha zinc fingers	53	79	IPR036236	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi12g1418	Glsi-ChrGlsi12	31485462	31487781	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi12g1418	5	435	C2H2 Transcription Factor Family	AT1G25250	53.547	3.45e-144	415

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Glsi12g1418		zf-C2H2	0.0042	CL0361