Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1417 ATGAGTGAGCATCTCATAAGGTTTGGTCCACCACCTCCAAAATTTAGTAGAGCAGCAGGGAAAGGAAGGGACCCTAAAGCCTTTACAATTTACGGGCAAAATAAATATACAAGCAGCAGGGACACACCGCCAGCAACCGCCCACTACCACCAGTCGGGGTACAAGGAGACAAAATGCCGCCACTTGGTTGTGCCTGATTCGAGGTTCGTAAGCTTGAAAATGGCAGACACAAACTCCGTTGAAGTGATATTGGACTTTCTGAAGAGGAATCGATTTACAAGAGCTGAGGCAGCTTTGCGCGGTGAGCTTAATGGTCGTCCTGACTTAAATGGCTTCCTTGAGAAACTTACCTTGGAAGAAAAGGCCTTACATAATATGCCAGAAAATGACAAGGGGAAGCCAGTTCTTGAAATTCAAGGGTTGGGTTCTCATAATAGTGTTGAAGTTTCAAGAGAACTGATAGTGAAGGAAATAGAGTGTGGGACTGGTAGAAATGTGACTGAAAGCAAATGGAGAAATGCACCTTCTATTGGAGAAAGGAACAAATCAACTGAAGTGGTTGGGACAAGTGACAAAAGCTTTGCTTTCTCTAAGAGTTCAGAGGATGGTGTACTTGATTTATACTCATGGAAGTTCAATCCTGGCAATGTTCCCCTGGACCCTTTCCAAAATGTTGCTGGTAGTAGTTCCAGTAACAGTTTGAAGGCCCTGGTATCTCAGCAATCAAAATATCAAACAAGTGAAGCTCTTGAAGCAGCCAACACCGTTGCAAAATCTGGAGAGGAAAATACCATTCCCACCGATAAAAAAGCCTCGTGGCTTGTAAGTAGTAGTAGAGCCTCTGAGGAGCAAAAACATGAAAGTTTGCAAGCCAAAGGACCTAGGGATTTTGATCGGCATCTTAAATATAACAATTCATCTTTAAAAGAGAACTTTGCAGATAATCCCTGGTCATCAACTGATGAGAATGTGAATTCATCTTCAGACATGTGGAGAAATTGTTCTGTTAAGACTGTATTCCCCTTTTCTAAGGTTGATGTATCTGCAAACTATGATATTGCAACTTATACAGACAAAAAAGAGGAAAAAAGAAGGGGGGAAACGAGTGATATTCGTGTGTCAATAAAAGAGCAAGTTGATGAAGTGGGGAGGGCTCTTTACCTAGGCAAGTCACTAGGCTGTTCAGAACAGAAAACCATTGGCAGCTTAAGTTTTCCTCTTGCACCTGGGAATCAGAAGGAAGAGTTACCTAGGCTTCCTCCTGTTAAACTCAAGTCAGAGGATAAGCCTTTGGTTATTAATTGGGAGGAGAAGTTTGAGCGTGATGGACCTGCTTCAAGAATTACTGGCCCCGACAGCACCTTAATCATAGGTTCATATCTGGATGTGCCTGTTGGACAAGAAATTAATCCTGCAGGTATGAAGAGAGCTGCAGGGGGCAGTTGGCTATCTGTAAGCCAAGGGATTGCAGAGGATACATCTGACCTTGTGTCTGGTTTTGCTACAGTTGGTGATGGGTTGAGTGAATCTATTGACTATCCAAATGAGTATTGGGACTCTGATGAATATGATGATGATGATGATGTTGGGTACATGAGACAACCTATTGAAGATGAGACCTGGTTTTTGGCTCATGAAATCGATTACCCAAGTGATAATGAGAAGGGAACTGGGCACGGAAGCGTTCCAGATCCTCAGGACAGAGGTCCAGCCAAAGATGAGGATGATGATCAATCTTTTGCTGAGGAGGATTCTTACTTCTCCGGAGAGCAATATATTCAAGCAAAGAATGTTGGACCAGTTACAGCTTCAGATGATCCTATTGGTCTAACAGTAACCGAAGTGTATGGCAGGACTGATGATGATGATTTAATGGCTCAATATGATGGGCAATTAATGGATGAAGAAGAACTGAATCTGATGCGTGCAGAACCTGTCTGGCAGGGCTTTGTCACTCAGACAAATGAACTAATCATGTTAGGAGATGGGAAGGTTCTGAGTGAGAGTGGAAGATTGCGACTTGAGGATATTTGTGTGGATGATGATCAGCATGGTTCAGTTAGGTCAATTGGGGTGGGGATCAACAGTGATGCTGCAGATATTGGCAGTGAAGTGCGTGAAAGTTTGGTTGGTGGTAGCAGTGAAGGTGATATTGAATGTTTCCGTGAACGTGATGTTGGACTTGGTAGCTCCAGACACACTCATCATGAATTGGATAAGAAATCTTCCAATAAGTTGAGCAAATATCAGAAGAAAAATGATAAGAGTGAGTCCAATAAATATGTCATTGAGGACGATAAGGGTGCATGCTTGCAGACGAAAACTCACACTGATGGGAGCTTCTCATTTCCCCTATCACTGAAAGATGACCAGATTATTCAGGGTGGGTCTAGCAAGTCCCTGTGGTCAAACAATTGCAATGCTGATGAGACTGATGAATGCCTTAATGCATTTGTGGGATCTAATGATATGCTTTCTTCATGGAGGCAGAAGAGTAGTGATTCTTCACCCACAAAAAGTTCTAGGGATGAAAATAATGCTAATGTGGTAAGATCCACAAATTCTTCTCCAACAACAGTCTCCAATTATGGATATACTGAAAAAGAGCATGTCAAGCTAGAACAGGATGAAAAGGTTGGTGTTGCAAGGGAAGAAGATCTAGGGGCATCACTAGAGGATGAAGAGGCTGCTGCTGTTCAGGAGCAAGTAAGACAAATAAAGGCCCAGGAGGAGGAATTTGAAACCTTCAATCTAAAGATTGTGCACAGGAAAAACAGAACTGGCTTTGAGGAGGACAAGAGTTTCCATGTTGTTTTAAATTCTGTAATAGCTGGGCGCTATCATGTCACTGAATATCTGGGATCTGCTGCATTTAGCAAAGCTATACAGGCTCATGACTTGCATACTGGCATGGATGTTTGTGTTAAAATTATAAAGAACAACAAGGACTTCTTTGACCAAAGCCTTGATGAGATCAAGCTTCTCAAGTATGTCAATAAGCATGATCCTGCAGACAAGTATCACATTCTTCGATTGTATGATTATTTCTATTATCGAGAGCATTTATTAATTGTATGTGAACTACTTAAAGCAAACTTATATGAGTTCCATAAATTTAATAGAGAATCAGGTGGGGAAGTGTACTTCACAATGCCAAGATTGCAGTCAATTACCATTCAATGTTTGGAAGCACTTCAATTTCTGCACAGCCTTGGACTAATACATTGTGACTTGAAGCCAGAGAATATTTTGGTAAAAAGCTATAGTAGATGTGAGGTGAAGGTCATTGATCTTGGGAGTAGTTGTTTCGAGACGGATCACCTTTGTTCGTATGTTCAGTCCAGGTCTTATCGTGCTCCAGAGGTTATTTTGGGACTTCCATATGACAAAAAGATTGATATCTGGTCACTTGGTTGCATCTTGGCAGAACTTTGTACTGGCAATGTCCTCTTCCAAAATGACTCCCCTGCAACATTACTTGCTAGGGTGATTGGCATTATTGGTCCATTAGATCAAAGTATGCTTGCAAAAGGACGGGATACATACAAGTATTTCACCAAAAATCATATGCTTTATGAACGGAATCAGGAAACCAACAGGTTAGAGTACCTGATTCCAAAAAAGACATCGTTGAGGCATAGATTGCCAATGGGAGATCAAGGCTTCATTGACTTTGTTGATCATTTGCTTGAGATTAATCCAAAGAAGCGGCCTTCTGCATCTGAGGCCCTGAAGCACCCATGGTTATCATACCCTTACGAACCAATATCATCGTGA 3777 0.4181 MSEHLIRFGPPPPKFSRAAGKGRDPKAFTIYGQNKYTSSRDTPPATAHYHQSGYKETKCRHLVVPDSRFVSLKMADTNSVEVILDFLKRNRFTRAEAALRGELNGRPDLNGFLEKLTLEEKALHNMPENDKGKPVLEIQGLGSHNSVEVSRELIVKEIECGTGRNVTESKWRNAPSIGERNKSTEVVGTSDKSFAFSKSSEDGVLDLYSWKFNPGNVPLDPFQNVAGSSSSNSLKALVSQQSKYQTSEALEAANTVAKSGEENTIPTDKKASWLVSSSRASEEQKHESLQAKGPRDFDRHLKYNNSSLKENFADNPWSSTDENVNSSSDMWRNCSVKTVFPFSKVDVSANYDIATYTDKKEEKRRGETSDIRVSIKEQVDEVGRALYLGKSLGCSEQKTIGSLSFPLAPGNQKEELPRLPPVKLKSEDKPLVINWEEKFERDGPASRITGPDSTLIIGSYLDVPVGQEINPAGMKRAAGGSWLSVSQGIAEDTSDLVSGFATVGDGLSESIDYPNEYWDSDEYDDDDDVGYMRQPIEDETWFLAHEIDYPSDNEKGTGHGSVPDPQDRGPAKDEDDDQSFAEEDSYFSGEQYIQAKNVGPVTASDDPIGLTVTEVYGRTDDDDLMAQYDGQLMDEEELNLMRAEPVWQGFVTQTNELIMLGDGKVLSESGRLRLEDICVDDDQHGSVRSIGVGINSDAADIGSEVRESLVGGSSEGDIECFRERDVGLGSSRHTHHELDKKSSNKLSKYQKKNDKSESNKYVIEDDKGACLQTKTHTDGSFSFPLSLKDDQIIQGGSSKSLWSNNCNADETDECLNAFVGSNDMLSSWRQKSSDSSPTKSSRDENNANVVRSTNSSPTTVSNYGYTEKEHVKLEQDEKVGVAREEDLGASLEDEEAAAVQEQVRQIKAQEEEFETFNLKIVHRKNRTGFEEDKSFHVVLNSVIAGRYHVTEYLGSAAFSKAIQAHDLHTGMDVCVKIIKNNKDFFDQSLDEIKLLKYVNKHDPADKYHILRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQFLHSLGLIHCDLKPENILVKSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLPYDKKIDIWSLGCILAELCTGNVLFQNDSPATLLARVIGIIGPLDQSMLAKGRDTYKYFTKNHMLYERNQETNRLEYLIPKKTSLRHRLPMGDQGFIDFVDHLLEINPKKRPSASEALKHPWLSYPYEPISS 1258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1417 1258 MobiDBLite consensus disorder prediction 827 869 - -
Glsi12g1417 1258 CDD PKc_DYRK_like 947 1249 - -
Glsi12g1417 1258 SMART serkin_6 947 1249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1417 1258 MobiDBLite consensus disorder prediction 280 299 - -
Glsi12g1417 1258 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1073 1085 IPR008271 GO:0004672|GO:0006468
Glsi12g1417 1258 PANTHER DUAL SPECIFICITY PROTEIN KINASE 481 1249 - -
Glsi12g1417 1258 MobiDBLite consensus disorder prediction 729 758 - -
Glsi12g1417 1258 FunFam Putative serine/threonine-protein kinase dyrk2 941 1028 - -
Glsi12g1417 1258 MobiDBLite consensus disorder prediction 255 299 - -
Glsi12g1417 1258 SUPERFAMILY Protein kinase-like (PK-like) 936 1251 IPR011009 -
Glsi12g1417 1258 MobiDBLite consensus disorder prediction 549 581 - -
Glsi12g1417 1258 Coils Coil 899 919 - -
Glsi12g1417 1258 MobiDBLite consensus disorder prediction 1 24 - -
Glsi12g1417 1258 Gene3D Transferase(Phosphotransferase) domain 1 1001 1249 - -
Glsi12g1417 1258 ProSiteProfiles Protein kinase domain profile. 947 1249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1417 1258 Gene3D Phosphorylase Kinase; domain 1 941 1028 - -
Glsi12g1417 1258 FunFam Serine/threonine-protein kinase ppk15 1026 1250 - -
Glsi12g1417 1258 MobiDBLite consensus disorder prediction 827 865 - -
Glsi12g1417 1258 Pfam Protein kinase domain 947 1249 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1417 Glsi-ChrGlsi12 31444367 31454898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1417 946 1244 MAP Kinase Gene Family AT5G19010 31.348 1.57e-30 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Glsi12g1417 Pkinase 1.4e-51 CL0016