Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1412 ATGAAGAAGATTCAGAGGCTACACTTTTCAATTAGACGCTTATGGTTTTACTACTTGTACAATGGAAAAGTTTTCTTCAACTATAAGTCATATACATGGGGAAGTGCCGTATGTCTATGGAAGGATATCTTGCTGATGGCTGCAGATGCTCATCCAATTGGGAAGAGGCTGGAGGAGGGGTTTGCTATCCATTTGGTTGTTACGTTTATTGACAAGTTATCTTCCAGGTTTGGAGAGTCTGACACAACAAAAATTCCTACAATTATGTTTTGCAAACATGCAAGTACAAGAGAATTGAAGTTCTGGTGCAAGGAAGATACTATGTGCAGTAGGGGTCATTGGAGGCCAGCTGAGGATGAGAAACTTCGGGAGTTGGTGGAACGCTATGGACCTCATAATTGGAACGCCATAGCTGAAAAGCTTCGAGGAAGATCAGGGAAGAGCTGCAGGTTGAGGTGGTTCAATCAACTGGACCCAAGAATCAATAGGAGTCCTTTCACAGAGGAGGAAGAGGAGAGGCTTCTGGCTTCTCATCGGATTCATGGGAACAGATGGGCTGTGATTGCAAGGCTTTTCCCGGGACGCACTGATAATGCTGTCAAGAATCACTGGCATGTCATGATGGCAAGGATCCGCCGAGAAAGGTCTAAACTTTATGCAAAACGGCCTCCCCATCAGATCACAAATCATTCTCCACAACCGGAGGATCACACTAACTCTATCGAGACGAGGACGAATCTCCCTTCTTTTGTTGAGAAATATTATGAAAAGCATAGCTACCCTTGTGTCACCTATAACCCTTTCCATTTTCCCAACAAGTTTCACTTTCAAACTCCAAGTTCCTGTTCAACAATGCTTCATGATAGAAGTCAATCAGTTGAGTTTTATGATTTTCTTCAAGTAAATACTGATTCTAATAGAAGCGAAGTAACAGACAATGCCAGAAAAGATGATGAAGAAGTGAATCAAGATGATGCTGTGGGACAAAAGAGCAAGGATGGTGTTTCATTCATTGATTTTTTGTCTGTTGGAACCTCCTAA 1041 0.4236 MKKIQRLHFSIRRLWFYYLYNGKVFFNYKSYTWGSAVCLWKDILLMAADAHPIGKRLEEGFAIHLVVTFIDKLSSRFGESDTTKIPTIMFCKHASTRELKFWCKEDTMCSRGHWRPAEDEKLRELVERYGPHNWNAIAEKLRGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVMMARIRRERSKLYAKRPPHQITNHSPQPEDHTNSIETRTNLPSFVEKYYEKHSYPCVTYNPFHFPNKFHFQTPSSCSTMLHDRSQSVEFYDFLQVNTDSNRSEVTDNARKDDEEVNQDDAVGQKSKDGVSFIDFLSVGTS 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1412 346 FunFam MYB transcription factor 111 162 - -
Glsi12g1412 346 PANTHER MYB PROTEIN-RELATED 111 240 - -
Glsi12g1412 346 ProSiteProfiles Myb-like domain profile. 158 208 IPR001005 -
Glsi12g1412 346 Gene3D - 111 162 - -
Glsi12g1412 346 ProSiteProfiles Myb-like domain profile. 111 157 IPR001005 -
Glsi12g1412 346 SUPERFAMILY Homeodomain-like 111 204 IPR009057 -
Glsi12g1412 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 158 212 IPR017930 -
Glsi12g1412 346 MobiDBLite consensus disorder prediction 307 329 - -
Glsi12g1412 346 SMART sant 110 159 IPR001005 -
Glsi12g1412 346 SMART sant 162 210 IPR001005 -
Glsi12g1412 346 Pfam Myb-like DNA-binding domain 114 174 - -
Glsi12g1412 346 Gene3D - 164 234 - -
Glsi12g1412 346 MobiDBLite consensus disorder prediction 309 327 - -
Glsi12g1412 346 CDD SANT 114 155 IPR001005 -
Glsi12g1412 346 CDD SANT 165 208 IPR001005 -
Glsi12g1412 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 106 157 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1412 Glsi-ChrGlsi12 31397236 31407751 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1412 108 346 MYB Transcription Factor Family AT1G17950 55.078 4.15e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi12g1412 Myb_DNA-bind_6 1.7e-16 CL0123