Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1410 ATGGTGATTACATCCGCAGTCAAAGACCAAGCAGCAGCACAGCAGTTGCACTGCACTTTTGCTTCCAGATATGTGCGTGACATTATTCCCAAGTTTAGGATGCCGGAGAAGTCCATACCAAAGGATGCAGCGTACCAGATAATAAACGACGAGTTGATGCTGGACGGAGCACCAAGGCTCAACTTGGCGTCGTTTGTGACCACTTGGATGGAGCCTGAGTGCGACAAGCTCATCATGGCCTCCCTTAACAAGAACTACGTTGACATGGACGAATACCCGGTTACCACTGATCTCCAGAACCGGTGCGTGAATATGATAGCACATCTCTTCCATGCTCCTATTGGAGACGATGATACTGCAGTAGGTGTGGGAACTGTGGGATCATCGGAGGCAATAATGTTGGCAGGTCTAGCTTTTAAAAGGAAATGGCAGATAAAGAGAAAAAAAGAAGGCAAACCATGTGATAAGCCGAACATAGTTACTGGGGCTAATGTGCAGGTTTGTTGGGAAAAATTTGCAAGGTACTTTGAGGTTGAGCTCAAGGAGGTGAAGCTTACTGAGGGATGCTATGTGATGGACCCAGTAAAAGCAGTGGAAATGGTGGATGAGAACACCATCTGTGTTGCAGCAATTTTGGGGTCAACTCTCACGGGAGAGTTTGAGAATGTGAAGCTGCTTAATGAACTTCTTACTAAAAAGAACGAGGAGACAGGGTGGAACACCCCAATTCATGTTGATGCTGCCAGTGGAGGGTTTATTGCTCCATTCCTCTACCCTGATCTTGAGTGGGATTTTCGTTTGCCATTAGTGAAGAGCATCAATGTTAGCGGTCACAAGTATGGTCTTGTTTACCCTGGTGTTGGCTGGGCTGTCTGGAGGAGTAAAGATGACTTACCAGATGATCTTGTCTTTCATATCAACTATCTTGGCTCTGATCAACCCACTTTCACCCTCAATTTCTCCAAAGGTTCCAGTCAAATAATTTCCCAATATTACCAGTTTATACGGCTTGGATTTGAGGGTTATAAAAACATCATGGAAAATTGCATGGAGAATGCAAGAATACTGAAAGAAGGACTTGAGAAAACAGAGCGGTTCAACATTCTGTCCAAGGATGTCGGTGTGCCACTGGTAGCCGTCTCTTTGAAAGACAGCAGTCAGCACACTGTGTTTGAGATTGCAGACCATCTGAGAAGGTATGGGTGGATTGTTCCTGCATATACCATGCCGGCGGATGCGCAGCACATTGCCGTACTCAGGGTGGTGATCCGGGAGGATTTCAGCCGCGGCCTTGTTGAGAGACTTATTTCTGACATTGACAAAGTAGTGGAGATGTTGGACACACTTCCAAGCACTGTGTCCACCAAAGCTGCCCATGTCACAGCTATCACTAGTGAGACTGATCACAAGGTCGAAAAGAGTGCAGTAGAGACTGGGGCAGAGGTTATCAAGCAGTGGAAGCGGCTTGTGGAAGACAAGAAAACTAAAGTGTGCTAG 1497 0.4643 MVITSAVKDQAAAQQLHCTFASRYVRDIIPKFRMPEKSIPKDAAYQIINDELMLDGAPRLNLASFVTTWMEPECDKLIMASLNKNYVDMDEYPVTTDLQNRCVNMIAHLFHAPIGDDDTAVGVGTVGSSEAIMLAGLAFKRKWQIKRKKEGKPCDKPNIVTGANVQVCWEKFARYFEVELKEVKLTEGCYVMDPVKAVEMVDENTICVAAILGSTLTGEFENVKLLNELLTKKNEETGWNTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYPGVGWAVWRSKDDLPDDLVFHINYLGSDQPTFTLNFSKGSSQIISQYYQFIRLGFEGYKNIMENCMENARILKEGLEKTERFNILSKDVGVPLVAVSLKDSSQHTVFEIADHLRRYGWIVPAYTMPADAQHIAVLRVVIREDFSRGLVERLISDIDKVVEMLDTLPSTVSTKAAHVTAITSETDHKVEKSAVETGAEVIKQWKRLVEDKKTKVC 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1410 498 FunFam Glutamate decarboxylase 6 67 - -
Glsi12g1410 498 SUPERFAMILY PLP-dependent transferases 18 444 IPR015424 -
Glsi12g1410 498 Gene3D - 1 67 - -
Glsi12g1410 498 NCBIfam glutamate decarboxylase 19 446 IPR010107 GO:0004351|GO:0006536|GO:0030170
Glsi12g1410 498 CDD DOPA_deC_like 61 441 - -
Glsi12g1410 498 FunFam Glutamate decarboxylase 68 362 - -
Glsi12g1410 498 Gene3D - 363 450 - -
Glsi12g1410 498 FunFam Glutamate decarboxylase 363 450 - -
Glsi12g1410 498 PANTHER GLUTAMATE DECARBOXYLASE 1 498 IPR010107 GO:0004351|GO:0006536|GO:0030170
Glsi12g1410 498 Pfam Pyridoxal-dependent decarboxylase conserved domain 35 383 IPR002129 GO:0016830|GO:0019752|GO:0030170
Glsi12g1410 498 Gene3D - 68 362 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1410 Glsi-ChrGlsi12 31386629 31389918 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1410 14 498 Calmodulin-binding Proteins AT3G17760 77.732 0.0 799