Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1406 ATGGCTGATTTTGAAAAAGATGAGGAGCCAATGCTGTCAGACACACATAAACGCCCGTCTGATGAACCTGTGGATTCTAAATTCCAGAGGCTTGTCTCCAGGACACGAAGTGCATCAATTTCTATTCCTATGAGCTCCATGGAGCCATATGAGAGAGAAACTAGTCTTGTGGGACATACTGGTCCACTAAGGAGTGAGAGAAAAACTCCTTTTGTGCAGATGAGTGGTCCACTATATGTTACCCCCAAAACTGGAAACCTTTTGCGGCAGAATATAGGTGTCACAGGGAACAAAACAGTGGAGAATATGACAGAAAATTTTTCTTCTTTTCGTGGCACAAGTGAAAATGATTGGCAAAACAACTATGCTGGCAAGAATGAACACTTACTGAGGTCTGGGCAACTGGGAATGTGTAATGATCCTTATTGTACTACTTGCCCTACTTACTTCAAGGCTACTCAGCAAAGAAATCCCAAGGCTTCCATTATATTTGATCCCAAGTTCCACAATGTTCTTTATGGGGATGCCAAGGGTTGTGCGAGAAGATTTATTTCTTTTCTGTCTTCATTTGTCCCTGGAGTTATGAATCCTCATACAAAAGTTGTACAGCACTGGAACAAGTTTTTTGTCATTTCTTGCTTAGTGGCAATATTTGTGGATCCATTATTTTTCTTCTTGCTCTCTGTAAATAAGGATCATAAATGTATTTTCATCAACTGGCCAATGACAACGACACTTGTTTTACTTAGATCCATGAATGATTTTTTATACTTCCTAAACATTCTTCTCCAGTTTAGGTTGGCTTATGTGGCTCCCGAGTCTAGGGTGGTTGGTGCTGGCGAGTTAGTTGACCATCCAAAGAAAATTGCTCTCCATTACATGCAGGGTTCTTTTCTTATTGATTTATTTGTTGTATTTCCACTTCCTCAGATAATGATATTGTTTGTCCTTCCAAAAAATTTGGGTTCATCAGGAGCAAACTATGCTAAGAATCTTCTGCGTTTAGCAATCCTTGTTCAGTATATTCCCAGATTGTGTCGGTTTCTGCCTCTGCTGATTGGTCAGTCTCCAAGCGGATTCATATTTGAGTCTGCATGGGCAAATTTCTTTATAAATCTTCTCACCTTTATGCTATCTGGCCATGTTGTTGGGTCTTGCTGGTACCTCTTTGGTCTACAGAGGGTTAATCAATGTCTGCGAGATGCCTGCCATAGAATGCATTTTGATGATTGCATGAAATTGATTGATTGTGGAAATGGCCTTACTGAAATTGTCTCAAAATCGAATTCATGGACAAACAATACCAATGCAACTATGTGTTTTTGGGAAGATGGTGATTTTACTTATGGTATCTATGCTAAAGCTGTCAATCTTACTACAATACCCAATGTGGTCACCAGATATGTATTTTCATTATTTTGGGGATTCCAGCAAATAAGTACTCTGGCCGGTAATCAGACCCCAAGCTATTTTGTCTGGGAAGTCCTTTTTACAATGGGCATCATGGGACTGGGACTCTTACTTTTTGCTCTTCTCATTGGAAATATACAGAACTTTCTTCAGGCTCTTGGACGGAGGAGGCTAGAAATGTCACTTAGACGCCGCGATTTTGAGCAATGGATGAGCCACCGGCGCTTACCAGAAGATTTAAAAAGGAGAGTAATACTTGCTGAACGTTATAACTGGGCTGCAACAAGGGGAGTAAATGAAGAAATGCTTCTGGAGAATTTACCAGAGGACCTTCAGAGGGACATAAGACGCCATCTCTTCAAATTTGTTAAGAAAGTTCGAATTTTTGCCCTGATGGATGAACCTATCTTAGATGTCATTTGTGAGAGACTAAGACAAAAGACATACATCAAAGGAAGCAATATATTGTACCAGGGTGGTCTGGTTGAGAAAATGGTCTTTGTTGTGCGCGGAAGATTGGAGAGTGTTGGAGAAGATGGGATTCGAGTCCCCTTGTGTGAAGGGGATGCTTGTGGCGAAGAACTTCTGACATGGTGTCTTGAACATTCTTCTGTAAACAAAGATGGTAGAAAAGTGAGGATTCTAGCACAAAGATTGCTTAGCAACAGGACTGTGACCTGCTTAACAAATGTGGAGGCATTTTCACTCCGATCTGCAGACCTTGAAGAAGTCACAAGCCTTTTTACAAGATTCTTGCGAAATTCGCACGTTCAAGGAGCCATAAGGTATGAATCACCTTACTGGAGAAGCCTTGCAGCAACCCGCATTCAGGTTGCATGGAGATACAGGAAGAAACGTCTGAGTCGTGCGGACACTTCGCAGTCAAATCAATCATCCAGGTCCTAG 2316 0.4128 MADFEKDEEPMLSDTHKRPSDEPVDSKFQRLVSRTRSASISIPMSSMEPYERETSLVGHTGPLRSERKTPFVQMSGPLYVTPKTGNLLRQNIGVTGNKTVENMTENFSSFRGTSENDWQNNYAGKNEHLLRSGQLGMCNDPYCTTCPTYFKATQQRNPKASIIFDPKFHNVLYGDAKGCARRFISFLSSFVPGVMNPHTKVVQHWNKFFVISCLVAIFVDPLFFFLLSVNKDHKCIFINWPMTTTLVLLRSMNDFLYFLNILLQFRLAYVAPESRVVGAGELVDHPKKIALHYMQGSFLIDLFVVFPLPQIMILFVLPKNLGSSGANYAKNLLRLAILVQYIPRLCRFLPLLIGQSPSGFIFESAWANFFINLLTFMLSGHVVGSCWYLFGLQRVNQCLRDACHRMHFDDCMKLIDCGNGLTEIVSKSNSWTNNTNATMCFWEDGDFTYGIYAKAVNLTTIPNVVTRYVFSLFWGFQQISTLAGNQTPSYFVWEVLFTMGIMGLGLLLFALLIGNIQNFLQALGRRRLEMSLRRRDFEQWMSHRRLPEDLKRRVILAERYNWAATRGVNEEMLLENLPEDLQRDIRRHLFKFVKKVRIFALMDEPILDVICERLRQKTYIKGSNILYQGGLVEKMVFVVRGRLESVGEDGIRVPLCEGDACGEELLTWCLEHSSVNKDGRKVRILAQRLLSNRTVTCLTNVEAFSLRSADLEEVTSLFTRFLRNSHVQGAIRYESPYWRSLAATRIQVAWRYRKKRLSRADTSQSNQSSRS 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1406 771 MobiDBLite consensus disorder prediction 1 36 - -
Glsi12g1406 771 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 138 762 - -
Glsi12g1406 771 Gene3D Jelly Rolls 596 720 IPR014710 -
Glsi12g1406 771 Gene3D - 208 523 - -
Glsi12g1406 771 Gene3D Helix hairpin bin 525 590 - -
Glsi12g1406 771 MobiDBLite consensus disorder prediction 1 29 - -
Glsi12g1406 771 SUPERFAMILY Voltage-gated potassium channels 197 526 - -
Glsi12g1406 771 SMART cnmp_10 598 733 IPR000595 -
Glsi12g1406 771 SUPERFAMILY cAMP-binding domain-like 526 722 IPR018490 -
Glsi12g1406 771 CDD CAP_ED 598 714 IPR000595 -
Glsi12g1406 771 Pfam Ion transport protein 204 526 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Glsi12g1406 771 ProSiteProfiles cAMP/cGMP binding motif profile. 598 666 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1406 Glsi-ChrGlsi12 31351496 31360587 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1406 5 676 Ion Channels AT3G17700 63.407 0.0 856