Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1404 ATGGAGTATGGAAGTGGAGGCGGTGGGTCCCCCGGGGACCATCACCCCGATGTTTCTGATTCCCAGAGAAGCAAAAAGCGCTACCATCGTCACACTGCTAACCAGATTCAGAGGCTTGAATCAATGTTCAAAGAGTGCCCGCATCCAGATGAAAAGCAGAGATTGCAGCTAAGCAGGGAGCTAGGTTTGGCCCCTAGGCAGATTAAGTTTTGGTTCCAGAACAGGAGGACCCAGATGAAGGCCCAGCACGAAAGAGCTGATAACTGTGCACTGCGATCAGAGAATGACAAAATAAGATGTGAGAACATTGCCATAAGAGAGGCCCTTAAAAACGTCATATGCCCTTCTTGTGGTGGCCCTCCTCTCCACGAGGATTCCTATTTTGATGAGCAAAAGTTGCGACTGGAGAATGCCCAATTGAAAGAAGAGCTTGATAGAGTATCTAGCGTTGCTGCTAAGTACATCGGAAGACCAATTTCCCAACTCCCACCAGTTCAGCCTATTCACATATCGTCTTTGGACTTGTCAATGGGAAATTTTGGGAGCCAAGGGATAGGTGGACCTTCCCTTGATCTTGATCTTCTCCCAGGGAGTTCGTCATCTATTCCACCAAGCTTGCCTTATCAGCCTGCTTGTCTTTCAGACGTTGACAAGTCCCTTATGTCAGACATTGCTGCGAATGCTATGGAAGAGTTACTCAGGCTTCTGCAGACGAATGAACCTTTGTGGATGAAGTCGAGCACAGATGGAAGAGATGTTCTTAATCTCGAGACCTATGAAAGCATGTTTCCGAGGACAAATAGTCACTTGAAGAACCCTAATGTTCGGATTGAAGCATCTAGAGATTCGGGAGTAGTAATTATGAATGGATTAACTTTGGTTGACATGTTTATGGACCCGAATAAGTGGATGGAGCTATTTCCCACAATTGTCTCAATGGCAAGTACAATTAAAGTGATATCTTCTGGGATGTTGGGTGGTCATAGTGGCACTTTGCAATTGATGTATGGAGAGTTGCAAGTGCTTTCTCCTCTTGTTCCAACTAGAGAGTTCTACTTCCTGCGTCATTGTCAGCAAATTGAGCAAGGCTTGTGGGCAATTGTAGATGTTTCTTATGATTTTCCACAAGATACCCAGTTTGCTCCTCAGTTTCGGTCTCATCGACTTCCTTCTGGCTGCTTGATCCAGGATATGCCTAATGGGTATTCCAAGGTTACTTGGGTTGATCATGTAGAGATTGAAGATAAAACTCCAACTCATCGGCTATATAGAAATCTTATTTATAGCGGGTTGGCATTTGGAGCAGAAAGGTGGCTTACTACTCTTCAGAGGATGTGTGAAAGATTTGCATGTCTCATGGTTTCCGGCAATTCCACCCGTGATCTTGGAGGAGTGATTCCATCACCGGAAGGCAAGAGGAGCATGATGAAACTTGCACAAAGGATGGTCACCAATTTCTGCGCAAGCATTAGCGCATCAAATGGCCACAGATGGACAACACTTTCTGGGATGAACGAGGTTGGAGTCAGAGTCACTGTCCATAAGAGCTCAGATCCTGGCCAACCTAACGGCGTAGTGCTGAGTGCAGCCACTACCATCTGGCTCCCTATACCTCCCCAGACTGTCTTCAATTTCTTCAAGGATGAAAGAAAAAGATCTCAGTGGGATGTCCTTTCGAACGGTAATGCTGTGCAAGAGGTTGCCCATATAGCAAATGGATCACACCCTGGGAATTGCATATCTGTTCTTCGAGCGTTCAACACTAGCCAGAACAACATGCTGATACTGCAAGAGAGCTGCATAGACTCATCGGGTTCCCTAGTGGTGTATTGCCCAGTTGACCTGCCGGCGATCAACATAGCGATGAGCGGGGAGGACCCGTCGTACATTCCTTTACTACCATCTGGGTTCACCATATCACCAGATGGGCAACCAGAGCAAGGAGGAGATGGAGCATCAAGCAGCTCCTGCACACACAGAAGTATGGGGAGGTCTGGGGGTTCGCTAATCACAGTTGCATTTCAGATTCTGGTGAGCAGTTTGCCATCTGCCAAGCTGAACTTAGAGTCGGTGACCACCGTTAATAACCTCATCGGCACCACTGTCCAGCAAATAAAGGCTGCCTTGAATTGTCCTAGTTCCTGA 2145 0.469 MEYGSGGGGSPGDHHPDVSDSQRSKKRYHRHTANQIQRLESMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNCALRSENDKIRCENIAIREALKNVICPSCGGPPLHEDSYFDEQKLRLENAQLKEELDRVSSVAAKYIGRPISQLPPVQPIHISSLDLSMGNFGSQGIGGPSLDLDLLPGSSSSIPPSLPYQPACLSDVDKSLMSDIAANAMEELLRLLQTNEPLWMKSSTDGRDVLNLETYESMFPRTNSHLKNPNVRIEASRDSGVVIMNGLTLVDMFMDPNKWMELFPTIVSMASTIKVISSGMLGGHSGTLQLMYGELQVLSPLVPTREFYFLRHCQQIEQGLWAIVDVSYDFPQDTQFAPQFRSHRLPSGCLIQDMPNGYSKVTWVDHVEIEDKTPTHRLYRNLIYSGLAFGAERWLTTLQRMCERFACLMVSGNSTRDLGGVIPSPEGKRSMMKLAQRMVTNFCASISASNGHRWTTLSGMNEVGVRVTVHKSSDPGQPNGVVLSAATTIWLPIPPQTVFNFFKDERKRSQWDVLSNGNAVQEVAHIANGSHPGNCISVLRAFNTSQNNMLILQESCIDSSGSLVVYCPVDLPAINIAMSGEDPSYIPLLPSGFTISPDGQPEQGGDGASSSSCTHRSMGRSGGSLITVAFQILVSSLPSAKLNLESVTTVNNLIGTTVQQIKAALNCPSS 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1404 714 ProSiteProfiles 'Homeobox' domain profile. 22 82 IPR001356 GO:0003677
Glsi12g1404 714 ProSiteProfiles START domain profile. 214 451 IPR002913 GO:0008289
Glsi12g1404 714 ProSitePatterns 'Homeobox' domain signature. 57 80 IPR017970 GO:0000981|GO:0006355
Glsi12g1404 714 Gene3D - 222 447 IPR023393 -
Glsi12g1404 714 SMART HOX_1 24 86 IPR001356 GO:0003677
Glsi12g1404 714 SUPERFAMILY Bet v1-like 216 449 - -
Glsi12g1404 714 MobiDBLite consensus disorder prediction 1 32 - -
Glsi12g1404 714 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 23 710 IPR042160 -
Glsi12g1404 714 FunFam Homeobox-leucine zipper protein GLABRA 2 223 447 - -
Glsi12g1404 714 FunFam Homeobox-leucine zipper protein HDG1 12 98 - -
Glsi12g1404 714 MobiDBLite consensus disorder prediction 640 662 - -
Glsi12g1404 714 SUPERFAMILY Homeodomain-like 6 82 IPR009057 -
Glsi12g1404 714 Pfam START domain 224 448 IPR002913 GO:0008289
Glsi12g1404 714 SMART START_1 223 448 IPR002913 GO:0008289
Glsi12g1404 714 Gene3D - 12 96 - -
Glsi12g1404 714 Coils Coil 130 150 - -
Glsi12g1404 714 Pfam Homeodomain 25 80 IPR001356 GO:0003677
Glsi12g1404 714 MobiDBLite consensus disorder prediction 647 662 - -
Glsi12g1404 714 CDD START_ArGLABRA2_like 218 447 - -
Glsi12g1404 714 CDD homeodomain 25 83 IPR001356 GO:0003677
Glsi12g1404 714 SUPERFAMILY Bet v1-like 469 706 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1404 Glsi-ChrGlsi12 31330228 31333327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1404 20 714 Homeobox Transcription Factor Family AT1G73360 67.847 0.0 958
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi12g1404 START 2.1e-50 CL0209