Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1403 ATGACATCATGGTTGGCTGTCGTTGGACTTTCTCGTAGGATTGATTCTCGAGAAAATCAATATTCTCCGGGAAAATTCAAATCGTGGCCTTGGAATCTGTTTACTCCAGCAAAATCTGAGGCTGCGGGAATCGCTCTCTATAAAGCTTGCGGTGTTTTCTCTGGCCGGACCAACTCTGATTTTGCTCCAATGGAGATGCAGGATGAAGGCACAAGGTCAAACAATTGTGGCGTAGCTAGTAATTGCCATTCCAATGGTGGCACAAAATCTGAATATCTTGTCCAGTTGAAGGATATAACTTCTATTGGAGACCATCATACCCCCAAGGCGAGGAAACCATATACCATTACTAAGCCAAGGGAAAAGTGGACAGAGGAAGAGCACCAGAAGTTCCTTGAAGCTTTGAAATTATATGGACGCGGTTGGCGTCAAATTGAAGAACACGTAGGTACCAAAACTGCAGTTCAGATTCGAAGCCATGCTCAGAAGTTCTTCTCTAAGGTTGTGCGGGAATCTGATGGCAGCACTGAAAGTTCTATAAAACCAGTTGACATACCTCCTCCTCGGCCAAAAAGGAAACCCTTGCATCCATATCCCCGTAAATCAGTTGACTCTTTTAAAGGACACTCGATACCAAGTGAACTAGAAAGATCTCCATCCCCAAACCTGTCAGTTGCAGTGAAAGACACTCAATCTCCGACCTCAGTGTTATCTGTATTTGGTTCAGAAACAGCATTTTCAGAGCAGACTAATAGATGTCTTTCCCCAAATTCTTGCACAACTGACATCCAATCGGTTAGTTTATCACTTGTTGAAAAGGAAAATGATTGTATTACATCTAGCTCATCTGACGAGGAACAGAAAGGGTTTCTAGCTTCAGTCCCTTCATTTACTGGTTTGAACGCACTTTTCTCCCTGAAGTCCGAGTCGACTTCCAAGGAAACTGAAAGTTTTAACGAAGATGCTTCCAACTTGCAACGCGTCACAAGCATTAAGCTTTTTGGAAGAAATGTCATCTTGGTAGAAAATCAGAAGTCACTGAATGTGGATAAGGAGAATAATAAGTCAATTATATGTAATCCTGCTGAGGTGGATGTTGTTGAGAATGAGAAGCCAGGCCAAGCATGGCCATCCAACCAAAATACACAATCATCGTTATCATTGGGCATGTGTAATAGTAACTGGAACACTCCTGATGGAGCTGAAGTGAAATGCATGGAATACCCAAAGGAGAACCTGTGCATTGTTGAATCCGCATCCGATGCTTCTTTGCCACGTTGGGATTTATGCCAAGGTCCTCCAGTTTTAAGCCCTGGGCCATCTAACCAAATTCTGAGTCTTCCACCTCTTCATCCTTCTTTGAAAGATAGAACGAGGGAGAAGGAGAGTCCTAGTACCGGTTCTAATGTCGAATCAATTAGTGAAATGGAAAATGGAAACAAGAACTGGGATTCTGTTGATTCTCAATGTCAATCACATCTAGAGGGAGTAACTGCCCCCTACAAGTATTCAAGGGGGTTTGTACCATATAAAAGGTGTTTAACTGAGATAGAAGCTAGTACATTCGTTGTTGCATTCGACGAGAGGGAGAGGCAACGAGCTCGAGTGTGCTCATAG 1617 0.431 MTSWLAVVGLSRRIDSRENQYSPGKFKSWPWNLFTPAKSEAAGIALYKACGVFSGRTNSDFAPMEMQDEGTRSNNCGVASNCHSNGGTKSEYLVQLKDITSIGDHHTPKARKPYTITKPREKWTEEEHQKFLEALKLYGRGWRQIEEHVGTKTAVQIRSHAQKFFSKVVRESDGSTESSIKPVDIPPPRPKRKPLHPYPRKSVDSFKGHSIPSELERSPSPNLSVAVKDTQSPTSVLSVFGSETAFSEQTNRCLSPNSCTTDIQSVSLSLVEKENDCITSSSSDEEQKGFLASVPSFTGLNALFSLKSESTSKETESFNEDASNLQRVTSIKLFGRNVILVENQKSLNVDKENNKSIICNPAEVDVVENEKPGQAWPSNQNTQSSLSLGMCNSNWNTPDGAEVKCMEYPKENLCIVESASDASLPRWDLCQGPPVLSPGPSNQILSLPPLHPSLKDRTREKESPSTGSNVESISEMENGNKNWDSVDSQCQSHLEGVTAPYKYSRGFVPYKRCLTEIEASTFVVAFDERERQRARVCS 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1403 538 FunFam protein REVEILLE 6 isoform X1 122 170 - -
Glsi12g1403 538 NCBIfam myb-like DNA-binding domain, SHAQKYF class 118 167 IPR006447 GO:0003677
Glsi12g1403 538 CDD SANT 122 165 IPR001005 -
Glsi12g1403 538 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 115 169 IPR017930 -
Glsi12g1403 538 Gene3D - 122 169 - -
Glsi12g1403 538 MobiDBLite consensus disorder prediction 186 203 - -
Glsi12g1403 538 PANTHER SWI/SNF COMPLEX-RELATED 84 350 - -
Glsi12g1403 538 MobiDBLite consensus disorder prediction 465 487 - -
Glsi12g1403 538 ProSiteProfiles Myb-like domain profile. 120 165 IPR001005 -
Glsi12g1403 538 MobiDBLite consensus disorder prediction 169 228 - -
Glsi12g1403 538 MobiDBLite consensus disorder prediction 438 487 - -
Glsi12g1403 538 ProSiteProfiles SANT domain profile. 118 169 IPR017884 -
Glsi12g1403 538 SMART sant 119 167 IPR001005 -
Glsi12g1403 538 SUPERFAMILY Homeodomain-like 114 168 IPR009057 -
Glsi12g1403 538 Pfam Myb-like DNA-binding domain 120 163 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1403 Glsi-ChrGlsi12 31321603 31328179 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Glsi12g1403 Myb_DNA-binding 1e-13 CL0123