Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1402 ATGGCTGCTAATGTTGTTCGTGCGGCTGCTATAACTCCATTGCCCCTTCCAAATGTTTTCCAGAATAAGAGGCAAAGAAACATAATTCTTCTGGGTAACTCTCAGCCCAACGGGAGAAACCGAAGATTCCCTTCGTTTTCACTCAGAAAAGGCTCCTCCTTTGTGTTGGCATGTCTACCTCCTCCTCCTGCTTCTCAATCACCAACCTCATCATCCCATAGCAGTTCTGCTCCTTCAACTAAGCTCTACGTCAGTGGGCTATCTTTTCGTACCACTGAAGAGAGCTTGCGAAATGCCTTTAAGAACTTTGGTCAACTTGTGGAAGTCAACCTGGTGATGGATAAAATAGCAAATAGACCAAGAGGGTTTGCTTTTCTTCGTTATGCAACTGAAGAGGATTCCCAGAAGGCTATTGAGGGAATGCATGGAAAGTTCTTGGATGGTAGGGTCATATTTGTGGAAGTTGCCAAACCAAGATCAGAGCTACGCCAAAGGCACAAGGAAAACCCTAGATAG 516 0.4516 MAANVVRAAAITPLPLPNVFQNKRQRNIILLGNSQPNGRNRRFPSFSLRKGSSFVLACLPPPPASQSPTSSSHSSSAPSTKLYVSGLSFRTTEESLRNAFKNFGQLVEVNLVMDKIANRPRGFAFLRYATEEDSQKAIEGMHGKFLDGRVIFVEVAKPRSELRQRHKENPR 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1402 171 PANTHER NUCLEOLAR PROTEIN 8 57 169 - -
Glsi12g1402 171 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 151 IPR000504 GO:0003723
Glsi12g1402 171 SMART rrm1_1 81 154 IPR000504 GO:0003723
Glsi12g1402 171 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 158 IPR000504 GO:0003723
Glsi12g1402 171 SMART rrm2_1 81 154 IPR003954 GO:0003676
Glsi12g1402 171 SUPERFAMILY RNA-binding domain, RBD 57 166 IPR035979 GO:0003676
Glsi12g1402 171 Gene3D - 63 171 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1402 Glsi-ChrGlsi12 31318057 31320345 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1402 80 169 Eukaryotic Initiation Factors Gene Family AT4G34110 30.851 2.66e-11 59.3