Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1400 ATGGCACGGGTCGGTTTACCACCGGGTTTCAGGTTTCATCCCACAGACGAAGAGCTTGTCAATTATTATCTTAAGAGGAAGATCAATGGCCAAGAAATTGAACTTGATATCATTCCTGAAATTGATCTCTACAAATGTGAACCCTGGGAACTAGCAGAGAAGTCATTTTTACCAAGTAGAGACCCAGAGTGGTACTTCTTTGGACCCAGGGATAGGAAATACCCCAATGGGTTCAGAACAAATAGAGCAACTCGAGCCGGGTACTGGAAGTCTACTGGGAAAGACAGGAGAGTCACATGCCAAAACAGATCCATTGGGATGAAGAAGACACTGGTTTACTACAGAGGAAGAGCCCCTCAAGGTATCAGAACTGACTGGGTCATGCATGAGTATCGCCTTGATGACAAAGAGTGCGAGGACAACTCCGGAATTCAGGATACTTATGCATTGTGCCGTGTGTTCAAGAAAAATGGAATTTGCTCTGAAATAGAAGAGCAAGCTGGGCAATGTAATTTGACACTAATTGAGAGCTCGCAAACCATAATGAATGAATGTGAAAGCATGTCTCCAGACGTAGCTGGAGCATCTTCATGCTTGGAAGAGGAAGACAAAGATGATTCATGGATGCAGTTCATCACAGATGATGCATGGTATCCTTCTAATGCAGCTATGGCAGGTTGCGAAGAGGTTTCTCATCTCACATTTACAAACTAA 714 0.4384 MARVGLPPGFRFHPTDEELVNYYLKRKINGQEIELDIIPEIDLYKCEPWELAEKSFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVTCQNRSIGMKKTLVYYRGRAPQGIRTDWVMHEYRLDDKECEDNSGIQDTYALCRVFKKNGICSEIEEQAGQCNLTLIESSQTIMNECESMSPDVAGASSCLEEEDKDDSWMQFITDDAWYPSNAAMAGCEEVSHLTFTN 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1400 237 FunFam Nac domain-containing protein 86 15 159 - -
Glsi12g1400 237 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Glsi12g1400 237 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Glsi12g1400 237 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Glsi12g1400 237 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Glsi12g1400 237 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1400 Glsi-ChrGlsi12 31309340 31312288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1400 1 226 NAC Transcription Factor Family AT3G17730 76.250 1.57e-133 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi12g1400 NAM 7.5e-40 No_clan