Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1396 ATGGTTAGAAAGAGGAGAACTGAAGTTCCCAGTGGGGGTGAAAGCTCTGAGACTCAGGAGAGTGGAGGAAGTGGTCGGGGTTCTCAACGTCCTGCTGAACGGAGTGCTCCACCCCAACAACAGTTGGCAGGAGGAGGATCCCAAGGAGGTAGAGGTTGGGTTCCTCAGGGAGGGCGTGGGGGTGGGGGTTATGGTGGGGGACGTGGTCGTGGAGTACCCCAACAGCAGTATGGTGGCCCCCCCGACTATCAAGGTAGGGGGAGGGGAGGAAATTTTCAGCAAGGAGGTCGTGGAGGATATGTTGGGGGCCATAGCGGTGGGGGCATGAGCAGTGGCCATGGGGTAGGACCTTCTTATGGTGTCCCATCCCGACCACAAGTACCCGAGCTGCACCAAGCATCCCCAGTTTCATATCAAGCTGGGGTGACTCCTCAGTCTGCTGTATCTGAGGCCAGTTCTTCTTCCCATCCGTCTGAGACATCACAACTGGAACAATCAATTGGGCAGTTGGCTATTCATTCAGAAGCTGCTTCTGTCCCACCACCCTCAAGTAAATCAATGAGGTTTCCCCTTCGTCCTGGAAAGGGTAGCTATGGCACCAAATGTATAGTCAAGGCTAACCACTTCTTTGCTGAGTTACCTAACAAAGATCTTCACCAGTATGATGTCACCATAACACCAGAAGTGACGTCAAGAGGTGTAAACCGTGCTGTTATGGAGACGTTGGTGGGGCAATACCGGGAGTCTCGTCTAGGAAGGAGACTTCCTGTGTATGATGGGCGCAAGAGCCTATACACAGCTGGTCCACTTCCTTTTGTTTCAAATGACTTTAGAATCACCCTCATTGATGAAGATGATGGAGCAGGAGGGCAAAGGAGAGAGAGGGAGTTCAGAGTTGTGATAAAATTGGCTGCACGGGCTGACCTCCACCACTTAGGACTCTTTTTGCAGGGGAGGCAAACTGATGCACCTCAGGAAGCACTTCAGGTTCTTGACATTGTTCTGCGAGAACTACCCACTTCTAGGTATTGTCCTGTAGGAAGATCATTCTATTCGCCTCATTTAGGCAAGAGGCAGCCATTAGGTGAGGGGTTGGAGAGTTGGCGTGGTTTCTATCAAAGTATTCGTCCAACTCAAATGGGATTATCACTCAACATTGATATGTCCTCAACTGCATTTATTGAACCATTGCCAGTAATTGATTTTGTAACTCAGCTGTTGAATAGGGATGTAACAACTCGACCATTATCTGATTCTGACCGCGTTAAGATCAAAAAAGCGCTTCGAGGTGTCAAAGTTGAGGTAACACATCGTGGAAACATGAGAAGAAAATATCGCATCTCTGGTCTGACATCACAGGCAACTAGAGAGCTGACATTCCCGGTTGATGAGATGGGAACAATGAAATCTGTTGTGGAGTATTTTTATGAGACGTACGGATTTGTAATTCAACATACTCAGTGGCCTTGTTTACAAGTGGGCAATACAAATAGACCAAACTATTTGCCGATGGAGGTGTGCAAGATTGTAGAAGGTCAAAGATACTCGAAGAGGTTGAATGAAAGACAGATTACTGCTTTGCTTAAAGTAACCTGTCAGCGTCCTCTTGACAGGGAGCGAGATATTATGCAGACGGTTCGTCATAATGCTTATCATGAAGATCCATATGCTAAGGAGTTCGGAATCAAAATAAGTGAGAGGCTCGCTCAAGTTGAGGCTCGCATTCTTCCTCCACCATGGTTGAAGTATCATGATACAGGTAGAGAAAAGGATTGCTTGCCTCAAGTTGGCCAATGGAATATGATGAATAAGAAAATGGTCAATGGGGGAACCGTTAACAACTGGATGTGCATTAATTTTTCAAGGAATGTTCAAGACAGTGTTGCCCGTGGCTTTTGTTATGAACTTGCCCAAATGTGTCATATATCTGGCATGGCATTTAATCCAGAGCCAGTACTTGCCCCAATCACTGCTCGCCCTGACCAGGTGGAGAAGGTTCTGAAAACACGCTATCATGATGCCATGACCAAACTGCAGGCAAAGGAGCTTGATCTACTTATTGTTATTTTGCCTGATAATAATGGCTCTCTCTATGGTGATCTGAAACGTATATGTGAGACAGATCTTGGGCTTGTTTCCCAGTGCTGTTTGACTAAGCATGTCTTTAAAATGAACAAGCAGTACCTTGCAAATGTTGCTTTGAAAATCAATGTGAAGGTTGGTGGAAGGAATACAGTGCTTGTTGATGCAATTTCACGACGCATACCATTAGTCAGTGACCGGCCCACAATTATTTTTGGAGCTGATGTAACTCATCCACATCCTGGAGAGGATTCAAGTCCATCAATAGCAGCCGTTGTGGCTTCTCAAGATTGGCCTGAAATTACAAAGTATGCTGGCTTGGTCTGTGCTCAAGCACATCGGCAGGAGCTCATTCAAGACCTTTTCAAACAATGGCAAGATCCAGCGAGAGGGATAGTAACTGGTGGAATGATCAAGGAGCTTCTCATATCTTTCCGGAGAGCAACTGGGCAGAAGCCACAACGCATCATATTTTACAGGGATGGTGTGAGTGAGGGGCAGTTCTATCAAGTCTTACTTTTTGAGCTTGATGCTATCCGCAAGGCATGTGCGTCCCTTGAACCTAATTATCAGCCTCCTGTCACTTTTGTGGTGGTTCAAAAGCGCCATCACACAAGGCTGTTTGCCAACAATCATCAAGATCGGAGTTCTGTTGACCGTAGTGGGAATATATTGCCTGGTACAGTTGTTGACTCCAAAATCTGCCATCCAACTGAGTTTGACTTTTACCTTTGTAGCCATGCTGGAATACAGGGCACAAGCCGGCCAGCTCATTACCATGTGTTATGGGATGAAAACAATTTTACTGCAGATGCACTACAAACCCTGACAAACAACCTTTGCTATACTTATGCAAGATGCACACGATCTGTTTCAATTGTTCCCCCTGCTTATTATGCACATTTGGCTGCTTTTCGAGCTCGATTTTATATGGAACCCTCAACATCGGATAGTGGGTCTATGACAAGCGCTGCTGCTGCTGGGCGTGGAGTGGGTGGTGGTGTGGGACGTAGCACTCGTGCACCTGGTGCTAATGCTGCTGTAAGGCCTCTTCCTGCTCTTAAAGAGAATGTGAAGAGGGTTATGTTCTATTGTTAA 3180 0.4657 MVRKRRTEVPSGGESSETQESGGSGRGSQRPAERSAPPQQQLAGGGSQGGRGWVPQGGRGGGGYGGGRGRGVPQQQYGGPPDYQGRGRGGNFQQGGRGGYVGGHSGGGMSSGHGVGPSYGVPSRPQVPELHQASPVSYQAGVTPQSAVSEASSSSHPSETSQLEQSIGQLAIHSEAASVPPPSSKSMRFPLRPGKGSYGTKCIVKANHFFAELPNKDLHQYDVTITPEVTSRGVNRAVMETLVGQYRESRLGRRLPVYDGRKSLYTAGPLPFVSNDFRITLIDEDDGAGGQRREREFRVVIKLAARADLHHLGLFLQGRQTDAPQEALQVLDIVLRELPTSRYCPVGRSFYSPHLGKRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVTTRPLSDSDRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDEMGTMKSVVEYFYETYGFVIQHTQWPCLQVGNTNRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPLDRERDIMQTVRHNAYHEDPYAKEFGIKISERLAQVEARILPPPWLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNNWMCINFSRNVQDSVARGFCYELAQMCHISGMAFNPEPVLAPITARPDQVEKVLKTRYHDAMTKLQAKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMNKQYLANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEITKYAGLVCAQAHRQELIQDLFKQWQDPARGIVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHQDRSSVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADALQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPSTSDSGSMTSAAAAGRGVGGGVGRSTRAPGANAAVRPLPALKENVKRVMFYC 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1396 1059 FunFam Protein argonaute-2 390 516 - -
Glsi12g1396 1059 CDD Piwi_ago-like 555 1005 IPR045246 -
Glsi12g1396 1059 SUPERFAMILY Ribonuclease H-like 671 1007 IPR012337 -
Glsi12g1396 1059 Pfam Glycine-rich region of argonaut 78 178 IPR024357 -
Glsi12g1396 1059 SMART Piwi_a_2 685 1006 IPR003165 GO:0003676
Glsi12g1396 1059 Gene3D paz domain 390 515 - -
Glsi12g1396 1059 MobiDBLite consensus disorder prediction 130 165 - -
Glsi12g1396 1059 FunFam protein argonaute 10-like 754 1059 - -
Glsi12g1396 1059 CDD PAZ_argonaute_like 396 510 - -
Glsi12g1396 1059 Pfam PAZ domain 401 526 IPR003100 GO:0005515
Glsi12g1396 1059 Pfam Mid domain of argonaute 594 669 IPR032473 -
Glsi12g1396 1059 SMART PAZ_2_a_3 401 533 IPR003100 GO:0005515
Glsi12g1396 1059 MobiDBLite consensus disorder prediction 1 165 - -
Glsi12g1396 1059 ProSiteProfiles PAZ domain profile. 397 511 IPR003100 GO:0005515
Glsi12g1396 1059 Pfam N-terminal domain of argonaute 201 335 IPR032474 -
Glsi12g1396 1059 SMART DUF1785_2 344 396 IPR014811 -
Glsi12g1396 1059 Gene3D - 575 748 - -
Glsi12g1396 1059 FunFam Argonaute 10 575 748 - -
Glsi12g1396 1059 ProSiteProfiles Piwi domain profile. 685 1006 IPR003165 GO:0003676
Glsi12g1396 1059 Pfam Argonaute linker 2 domain 537 583 IPR032472 -
Glsi12g1396 1059 Pfam Argonaute linker 1 domain 345 395 IPR014811 -
Glsi12g1396 1059 Gene3D - 754 1059 IPR036397 GO:0003676
Glsi12g1396 1059 MobiDBLite consensus disorder prediction 12 46 - -
Glsi12g1396 1059 Pfam Piwi domain 686 1005 IPR003165 GO:0003676
Glsi12g1396 1059 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 180 1007 - -
Glsi12g1396 1059 SUPERFAMILY PAZ domain 203 545 IPR036085 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1396 Glsi-ChrGlsi12 31281610 31289213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1396 82 1059 Eukaryotic Initiation Factors Gene Family AT1G48410 81.117 0.0 1618