Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1392 ATGCCACGACATCAACGAACCGCTGCTGCATCTGTCTCTCGCGCCCTTGCCTTCGTTTCCCTCACTAAACGGTTATTAGCCACTAATTGTTCAAAAATGGCTGATGGTCATGAGACTGATAAGAACATTGAGGTATGGAAAATCAAGAAATTGACCAAAGCACTTGAGGCTGCTCGAGGAAATGGGACAAGTATGATTTCCCTTATCATGCCCCCACGTGATCAAATATCTCGTGTTACCAAGATGCTTGGTGACGAGTTTGGAACTGCTTCAAACATAAAAAGCAGGGTGAATAGGCAGTCTGTGCTTGGTGCAATCACTTCTGCTCAGCAGAGGCTTAAGCTCTATAACAAGGTTCCTCCAAACGGGCTTGTTCTGTACACTGGGACCATTGTAACGGACGATGGGAAAGAAAAGAAGGTGACTATTGATTTTGAACCTTTCAGGCCTATCAACGCATCTCTCTACCTTTGTGACAACAAGTTTCATACAGAAGCTCTAAATGAGCTGCTAGAGTCTGATGACAAGTTTGGTTTTATTGTGATGGATGGCAATGGTACTCTTTTTGGTACCTTGAGTGGTAATACAAGAGAGGTGCTTCATAAATTTAGTGTGGATCTCCCAAAGAAACATGGAAGAGGGGGGCAATCAGCTCTACGTTTTGCTCGTCTTCGCATGGAGAAGCGTCATAACTATGTGAGGAAGACTGCTGAGCTTGCAACACAATTTTATATCAACCCTGCTACTAGTCAGCCTAATGTATCTGGGTTAATTCTGGCTGGTTCAGCTGACTTCAAAACTGAGCTCAGTCAGTCAGATATGTTTGATCCTCGACTTCAGGCAAAAATACTTAATGTTGTAGATGTATCTTATGGAGGGGAGAATGGCTTTAATCAGGCTATTGAACTATCAGCAGAGATTCTGTCCAATGTGAAGTTTATTCAGGAGAAACGCTTGATTGGAAAATACTTTGAGGAAATTAGTCAGGATACTGGAAAGTATGTTTTTGGGGTTGATGATACTCTTAAAGCTCTGGAGATGGGCGCTGTTGAGATACTTATTGTCTGGGAAAATCTGGATATGAATAGATATGTCTTAAAGCATAGCGTAACTGGTGAGCTTGTTATTAAGCACTTTAACAAGGAACAAGAAGTCAACCAGAACAATTTTCGGGATCCTGCCAACTCTGCTGAATATGAGGTTCAGGAGAAATTGTCTCTGCTGGAGTGGTTTGCAAATGAGTACAGACGGTTTGGTTGCACTCTTGAGTTTGTCACCAATAAATCACAAGAAGGTTCACAGTTTTGCAGGGGTTTTGGTGGAATAGGGGGGATCCTGCGTTACCAGCTTGATATGAGATCATTCGATGATTTCTCTGATGATGAAGTGTATGATGATTATGAATAG 1407 0.4222 MPRHQRTAAASVSRALAFVSLTKRLLATNCSKMADGHETDKNIEVWKIKKLTKALEAARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALEMGAVEILIVWENLDMNRYVLKHSVTGELVIKHFNKEQEVNQNNFRDPANSAEYEVQEKLSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDDFSDDEVYDDYE 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1392 468 SUPERFAMILY L30e-like 310 452 IPR029064 -
Glsi12g1392 468 Pfam eRF1 domain 3 313 450 IPR005142 -
Glsi12g1392 468 Pfam eRF1 domain 1 53 170 IPR005140 -
Glsi12g1392 468 SMART eRF1_1_2 36 172 IPR005140 -
Glsi12g1392 468 FunFam Peptide chain release factor subunit 1 311 468 - -
Glsi12g1392 468 Gene3D eRF1 domain 2 168 309 IPR042226 -
Glsi12g1392 468 Gene3D eRF1 domain 1 29 167 IPR024049 -
Glsi12g1392 468 FunFam Eukaryotic peptide chain release factor subunit 1 168 309 - -
Glsi12g1392 468 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 38 172 IPR024049 -
Glsi12g1392 468 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 37 461 IPR004403 GO:0003747|GO:0006415
Glsi12g1392 468 FunFam Eukaryotic peptide chain release factor subunit 1 34 167 - -
Glsi12g1392 468 Gene3D - 311 468 IPR029064 -
Glsi12g1392 468 NCBIfam peptide chain release factor aRF-1 45 449 IPR004403 GO:0003747|GO:0006415
Glsi12g1392 468 SUPERFAMILY Translational machinery components 174 308 - -
Glsi12g1392 468 Pfam eRF1 domain 2 176 309 IPR005141 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1392 Glsi-ChrGlsi12 31254094 31256689 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1392 33 466 Eukaryotic Initiation Factors Gene Family AT3G26618 89.401 0.0 813