Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1388 ATGAACCAAAAAGCCTCCGTCTCTAAGGAACTCAATGACAAGCACACCAAGATCTTAGAGAGCCTTCTTAAGCTGCCTGAAAACAGGGAGTGTGCTGACTGCAGAAACAAGGCACCGCGATGGGCAAGTGTGAACCTAGGTATTTTCATATGCATGCAATGTTCAGGAATTCATCGAAGTCTTGGAGTGCATATATCAAAGGTGCGGTCCACAACTTTGGATACATGGTTGCCAGAACAAGTCTCTTTCATGCAATTCATGGGTAATGGGAAGTCAAATAAGTATTGGGAGGCAGAGCTGCCACCAAATTTTGACAGAAGTGGATGCGGACTCGAGAAGTTTATTCGAGCAAAGTATGTGGAGAAAATATGGGCTAAAAAAGGTGGATTCCACTCAACTTCGAAGTCAGCCGAAATAATCTGTGACTTGAATGAGTCACCAGTTGGTGGGGCCAAGAGTAGCAATCCAAAGAGCAATAGGAGACTTTCCCTTGAGGAAAGCATTCTTACAAGCCACATGGCACAGATCCTTCCTCCAGTGACAAGATCTCGTGGGGGTTTTATAGATGTTCAAAGGAAGAGTTCTTCACCCACTGTAAAGAGGCCATTCCCATCACTTGACTTTGATAAGTCCACAGTAAACAATGGTTCTGGTGACCTTTTCAGCTTGCTTGGCATCCGTGATGATAAAAAGGACTCCTTTACTGTACCTCCTCCGAGCTGGACAACATTTGATTGTAAGACGACAATACTTATATCATACATCATCCTTTGTGTTTCAGCTTGGTCTACATTTACAAGATTAGGTGTTGTCACAGGTTTGAAGACTGGGCTTTCATTCAACATGCTGCAGAAGTGCAATATATTTGGGGTACAGTGTCTCCATCCTGATACTGAGACGTCCATAAAATGGTTTAATTAG 921 0.4332 MNQKASVSKELNDKHTKILESLLKLPENRECADCRNKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVSFMQFMGNGKSNKYWEAELPPNFDRSGCGLEKFIRAKYVEKIWAKKGGFHSTSKSAEIICDLNESPVGGAKSSNPKSNRRLSLEESILTSHMAQILPPVTRSRGGFIDVQRKSSSPTVKRPFPSLDFDKSTVNNGSGDLFSLLGIRDDKKDSFTVPPPSWTTFDCKTTILISYIILCVSAWSTFTRLGVVTGLKTGLSFNMLQKCNIFGVQCLHPDTETSIKWFN 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1388 306 SMART arf_gap_3 16 132 IPR001164 GO:0005096
Glsi12g1388 306 Pfam Putative GTPase activating protein for Arf 17 127 IPR001164 GO:0005096
Glsi12g1388 306 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Glsi12g1388 306 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Glsi12g1388 306 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Glsi12g1388 306 CDD ArfGap 19 119 - -
Glsi12g1388 306 FunFam stromal membrane-associated protein 1 isoform X1 1 129 - -
Glsi12g1388 306 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 137 IPR001164 GO:0005096
Glsi12g1388 306 Gene3D Arf GTPase activating protein 1 129 IPR038508 -
Glsi12g1388 306 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 186 IPR044520 GO:0005096
Glsi12g1388 306 SUPERFAMILY ArfGap/RecO-like zinc finger 15 126 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1388 Glsi-ChrGlsi12 31231765 31237917 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1388 19 119 C2H2 Transcription Factor Family AT4G05330 48.598 8.25e-28 108