Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1383 ATGTCTTCTGCCGGCGGCGTCATTACCTCCAGTGCTTCTCTACAATACTTCTGCCACCAGTGCAATCGCACCGTCTCCATTTTGACATCCTCTTCTTCCGATATCGTCTGTCCCAATTGCAACGGTGGCTTCATTGAAGAGGTCGAAAATTCGATCCCTAGCCCCAACCCTAACCCGACTAATCCCTTATTCTCTTTCGCCTCAGAGTTTGGTGGCGGCAGTGGTGGCTTTCCTCTTATATTCTCTAACACTCCCGGCGGCGGCGGCGCAGTTGCCGCTGGGCTGCCATTCGACGATCTCGCTGCCCTCTTTGGCGGTGGACCTTACCGATCGTCTTCTTTTGGAGAAACTGATGCCTTCAACCCTTTGGCGTTTCTTACTAACTACCTTCAGACCATGAGAGCTCGTGGTGCCGATGTTCAATTTGTGATAGACAGCTCGGGAGACTCCCGGGGAGCTTTCGGTCTTCCCTCAAATCTCAATCTTGGCGATTACTTCTTCGGCCCTGGTCTTGAACAATTGATTCAACAGCTTGCGGAGAACGATCCGAACCGATATGGGACACCCCCAGCTTCAAAATCTGCGATCAAGGGGCTTCCTAACATCGAGATTTCGGAGGAGTTGTTGGCTTCGGATTCATCGCAGTGTGCAGTGTGTAAAGACACCTTTGAACTAGGGGAAGAGGCGAAACAAATGCCATGTAAACACATTTATCATTCAGATTGCATTCTGCCTTGGTTGGATATGCACAATTCATGTCCTGTTTGCCGGTACGAGTTACCAACTGACGATCCTGACTACGAGCAAAGGGATCGCGGGACCTCTGTTCAGGGGGATCGAAACCAGTTGCCCGGGGCCCATGGGTCCGCTGTTTCGTCTGAAGGTGGTAATGACAGTAATATAGGTGGTGGTGGTGCAACATCTGGAGATAACACAGTGTCGTCGAGGGAGCGGAGGTTTAGGGTTTCTCTTCCTTGGCCGTTTAGGCAATCCCCTTCCATTGCCGAGACAAGCAATATTGGGAATGCCAATAATAGCGGAAACAACAGTAGGGAACCAAATCCTGGAAGCAGGGGAAATGGGAATTTTGAGTCAGAGACCAGACAAGAAGATCTTGATTAA 1122 0.5045 MSSAGGVITSSASLQYFCHQCNRTVSILTSSSSDIVCPNCNGGFIEEVENSIPSPNPNPTNPLFSFASEFGGGSGGFPLIFSNTPGGGGAVAAGLPFDDLAALFGGGPYRSSSFGETDAFNPLAFLTNYLQTMRARGADVQFVIDSSGDSRGAFGLPSNLNLGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIKGLPNIEISEELLASDSSQCAVCKDTFELGEEAKQMPCKHIYHSDCILPWLDMHNSCPVCRYELPTDDPDYEQRDRGTSVQGDRNQLPGAHGSAVSSEGGNDSNIGGGGATSGDNTVSSRERRFRVSLPWPFRQSPSIAETSNIGNANNSGNNSREPNPGSRGNGNFESETRQEDLD 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1383 373 Pfam Ring finger domain 215 257 IPR001841 -
Glsi12g1383 373 MobiDBLite consensus disorder prediction 276 313 - -
Glsi12g1383 373 MobiDBLite consensus disorder prediction 330 363 - -
Glsi12g1383 373 MobiDBLite consensus disorder prediction 261 373 - -
Glsi12g1383 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 263 IPR013083 -
Glsi12g1383 373 SMART ring_2 216 256 IPR001841 -
Glsi12g1383 373 MobiDBLite consensus disorder prediction 261 275 - -
Glsi12g1383 373 ProSiteProfiles Zinc finger RING-type profile. 216 257 IPR001841 -
Glsi12g1383 373 CDD RING-H2_RNF126-like 215 257 - -
Glsi12g1383 373 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 112 261 - -
Glsi12g1383 373 Pfam zinc-ribbon 15 47 IPR039525 GO:0061630
Glsi12g1383 373 FunFam E3 ubiquitin-protein ligase RING1-like 177 263 - -
Glsi12g1383 373 SUPERFAMILY RING/U-box 196 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1383 Glsi-ChrGlsi12 31207540 31208661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1383 157 325 C3H Transcription Factor Family AT5G01980 42.442 5.75e-37 137