Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1370 ATGTCCAATTTGATTTTTCCATCTGGTGAAGCCAGTGTTTCCTCATCCTCAGGCAATATAACCGAAGTTGGTACCAATTATCCTCCTCAACAGTACTTCGCACCACCATCAACTCAACCTCAACCAGTGAAGGAAAAGAGAACCCTCCCAGGAAACCCAGACCCAGATGCTGAAGTTATCGCCTTGTCTCCCAAGACTCTTATGGCAACGAATAGGTTCATTTGTGAGATCTGTAACAAAGGGTTTCAAAGAGACCAGAATCTTCAGCTTCACAGAAGAGGGCATAATTTGCCATGGAAGCGAAAGCAGAGAACAAGCAAAGAGGTAAGGAAGAAAGTGTATGTGTGCCTAGAACCCACTTGTGTGCCCCGTGACCCATCAAGGGCACTTGGGGACCCGAATGGGATCAAGAAGCACCTCTGTAGAAAGTACGGTGAGAAGTGGAAATGCAATAAGTGCTCAGAGAGAACAAACGTCGAGATCAAGCTCTTTAGAACTTCAAAGGAATATTGA 513 0.4542 MSNLIFPSGEASVSSSSGNITEVGTNYPPQQYFAPPSTQPQPVKEKRTLPGNPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKRKQRTSKEVRKKVYVCLEPTCVPRDPSRALGDPNGIKKHLCRKYGEKWKCNKCSERTNVEIKLFRTSKEY 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1370 170 Pfam Zinc-finger double-stranded RNA-binding 73 95 IPR022755 -
Glsi12g1370 170 Gene3D Classic Zinc Finger 52 118 - -
Glsi12g1370 170 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Glsi12g1370 170 MobiDBLite consensus disorder prediction 1 45 - -
Glsi12g1370 170 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 28 160 IPR031140 -
Glsi12g1370 170 MobiDBLite consensus disorder prediction 1 55 - -
Glsi12g1370 170 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 95 IPR013087 -
Glsi12g1370 170 FunFam protein indeterminate-domain 12-like 52 120 - -
Glsi12g1370 170 SUPERFAMILY beta-beta-alpha zinc fingers 71 96 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1370 Glsi-ChrGlsi12 31127456 31128787 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1370 1 160 IDZ Gene Family AT3G13810 65.698 1.55e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi12g1370 zf-C2H2_jaz 1.8e-05 CL0361