Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1368 ATGGAAATCCGCACCACATTCAAATGCAGATGTATTGCACGGAAACAAACACCACTTGGACTCTGTCGTTCGATGAATGAGATGAGATCAAATTGGTTAGCCGTTGCTGTAACCTTTGAGCATGTCGAGAAAAGATTGGAAGAAGGTGGACAAAACGCTTTGAATTTTAAGTGTACGAAGATCCTTCACGGAGTTGATAAATCGATTGCATGCCAGACACCAGAGAAGATTTGTGAACCTTTGTCTACAAAATCCAAGGATGGACTAATCCCGCTTCCAGAAAGATACAGGGTTCTAGCGGATTTATTTGAGCACATGACTTGTTCACTGAGGTTACTTCATCTGCGTAAAAAGTCTCAAACTTTTCTAAACATTTGCACCCAGGTTGAAGTTCTTGCCAAAAGAAAATTCTCTTACGAGCATCTTGCGCAGATAAAGTATATACTTCCTGAAACCATACAAATAGACAAGGCATTAGTACATGACAGTAAAACCTTGTGTATGAAGCCTGATCTGAAGATCACCTTGGTATTTGAGGCTGAGCAAGAAAACTCTAGTGAATCTCCTTATATGGTTGTGCGGCAACTTTTTGGTTCTAGGCTAATAAACTTCTTCAATACGCATCCTGAGGGTTCCGATATTCCAGAGGCTACACTGCCAGAGCCTTTTCAACAAAGAACTCGTAGCTTGATTTGTGAGGATTTGCTTGTAGATCCTTCAACGTCATTTTCATCAACTTCTAATCAAATTCAACCATTACCACAGAAATGTCAACCATATCCTTTTAATAGGCATTTCTCTAAGAAGAATGTTGTTACAAACACCGAAAATATCCAGTGTTTTTTATCAAATCAAACTGCATTGTCATGTCATTCATCTAATTGCCTGGATAATGATGGAAGTAAAAGTGAAAGCAAATGGCAGAAGAGATCTACTGCTTCATGTTTGAAATCTGATAGCGTGACTAATCAGGATATGGAAGAAGGCCAGCAGAAAGAATCATGTTTTTTGTGTTTTCAACCTGATGTTATTAATACACCAGCACGTCAGATTTGCTCTCCACCGTCTATTAGTTGTGGTAGCTATGAAAGCCCTGATGTCAAGATTGCCTCGTCCATTGATAATTTAATGACTGAGACACCTGCACAGTCAGCACCTAGAAGATTGATGCCCAGTTCTGATGTTAAGCAGATAATGACCACCCAAAATTCAACTTCATGTAATAAGCCTGCAAAAAGAGTTCTTGACTTTTCATGCATGGAAGGTGATAATCAAGAATTGGACATTAGCGAAGACAAGTTAGAATCTAGCAGAACTGCAAGTGATAGCATTCCTGAAGCTAGTAGAGAATGTAATGAGGATTTTGACGCTTCTAGTTATGTTGTGCTACCCCAGGAGGTGGAAGAGAGCCTTGGTTGCTCTCATGAGAAGACAAACAAAAATCAAGCTGCTTTAGCAACATGGCAGCAGATGTCTTCATCGTTGCTTGGCCTGGTTGATGTGATTCACTCTATATCTTGTTCTGTCACATGCTCTCAAATCACAAAAGAGGAGCTCCTGCACAAGATAATTATGAACAGTCTAGATTTTGTTGAGACAAGAGAAGTTGAAGAACGGATTGAATTTCTTGAAAAGGTGATGCCGGATTGGATCTGCAAGAAGTTGGTTCCTTCTGGAGATATTATGTACTGCATCAAGAAACTGTCAGATTTGGACTCCGTTCGATCAATGCTGATTAGCAATTATGTCGTAAAGACTATTATGTCTTCTTCTTTTGCTCATGGTTGGGCTTATGATGTCTTCCTCAGTTTCAGAGGTGAAGATACCAGAAGAAGTTTCACAAGCTCTCTGCATCATGCTTTGCATCAGAGCGGGATTAATGCATTCATAGACGATGAGAAGCTCAGGAGAGGGGAAGAGATTTCCCCAGCTCTTCTCAGAGCAATCGAAGAGTCTAGAATTTCTATCATCGTATTCTCTCAAAACTATGCATCTTCCACATGGTGTCTTGAGGAACTTGTTAAGATCCTTGATTGTATGAAAACAAGGGGGCAATCGGTTTGGCCAGTTTTCTACAATGTTGATCCTTCTGTGGTACGGCATCAAAGAGGAAGTTTTGGCCGAGCAATGGCTAAGCATGAAGCCAGATTCAAGGAGAACACGGAAAAGTTGCACAAGTGGAAGAGGGCTTTGTCTGAAGCAGCCAACTTGTCCGGTTGGAGCTTAGAAAATGGGTATGAGTATGAATTTCAGCTTATCCAAAGGATTGTTGAAGAGGTCTCTGGTAAATTAGATCACACCCTTCTGCATATTGCTGAATACCCAGTTGGATTAGAGGCTCGCATATCAGAAGTGAAATCGCTTTTGCAGATTGAGCCTCACGAACATATTCGCATGATAGGAATCTACGGACTTGGAGGTATAGGAAAAACAACAATCGCAAGAGCTCTATTTAACTCAATTGCTGATCAATTTGATGCTGCAAGTTTCCTTGCTGATATAAGAGAAAGTTCAAATCAACGACAAGGTTTATATTTGGACTCTTTAACGTCAATGGATTTGAGCCATTGTGAATTCTTGACAAAACTACCTGACATTTCTGGTGTTCCAAATTTGACAGAACTAAATCTTGATTATTGTACAAATTTAGAAGAGGTTCATGATTCTGTTGGATTTCTTGAGAAACTTGTAGAATTGAGGGCTTATGGATGCACCAACCTTAGGGTATTTCCACGTGCCATTAGCTTGACATCACTCAAAAGTCTGATCCTTAATTGGTGCTCAAGTCTTCAGAGGTTCCCAGATATCCTAGGGAAAATGGAGAGTCTCGTATCAATTTCCATTGAGGCTAGTGGTATAGAAGAATTGCCTCCTTCCATTGGAAACCTTATCGGGCTTCAAGAATTAAGCATGACATCTTGCTTAAGTCTCAAGGAACTGCCAGAAAGCATTGACATGTTGCAAAATCTGAGAAACCTTGATATTGAAAGCTGTCCACAACTTCGAAATTTCTTGAAAAAGTTGAAGGGTGTGGGACAACGTGGTACCCATACCTTTGATAATGTCCATTCACTGAATCTAGAAAACTGTGGCCTATTGGATGAAGATCTTCCCATAATTTTCAGCTGCTTTCCCAACTTGGCTTCATTAGTCCTTTCAGGTAACAACTTTGTAACCCTTCCATCCTGCATACAAGAATTTCTTGACTTGCAATTACTTCACTTAGACAACTGCAAGCAACTCCAAGAAATTCCAGGCTTGCCTCCCTATTTACAGTACATTAATGCAAGAAACTGCACATCCTTGAAGGCAGAGTCATCAAGCTTATTACTGAGTCAGGAATATGAGTTGCAAGTTGTTGTGCCTGGAACAAGGATTCCAAACTGGTTTGACCTCTGCAGCAAAGGAGAATATATGACATTTTGGGTTCGCAAAAAATTTCCAGTGATTACTCTATGTTATGTTCTTGCTGTAAAGACAGAAATGAAGAGTTTCAATTGTGAAATTCGCTTCTTTATCAATAGTGAAGAAGTGTTTGAAATGGAAATACCAACATTATTTCCAGAAATGGTGACAGATCATGTGTGGCTGTATGATCTGCGAACTCATCCATCTGTCCAGTGGCATAATCTTGACTCATATCTAGAGAATGACTGGAATCAGGTGGAGATTTCATGTGAGAAACTATCTGATGCACCGAATGTAACTGTGAGCTGGTGTGGTATTTATGTATGCAAGCAAGAAGCAAACGTGAAGGATATCCGATTTACTGACCCTGGTCTTGATTCAAATTCAATAGCAGACTCTGATAAGATTGAAACTGAAAGTGACAAGTCAATGGAAGATTTTGAATTTTCCCCCAAAATAGAAGATAATTGCTGCAATGTCAAAGATGCCTTGGAAGGTTGTAAGACACAGGAAAGCCAAATGCCAGAATGCTGGGGAACTACTTGTAAGCTTAGAGGAGACAATACAATGGCAGTGCTACCTACCATCAACTTCACCAGAAATCAAATAAATCTAACTCCAGATGATGTAGAAATGGAAGCATTTTATGCTTCTCTAGATGCTGAGACGTCTGTTCTATTATCCGATACCACAGCCATTTTTCAATTGGCCAACACTAAGCCAAGTGAAGAAACCCAAAAAGCATTGAAGATTTTTCAAGAGTTTCTCACCAAAGATTTTTCTGACTTGTTGGAACTTGGTGAGTACAGTACCATGAAATCTACCTTAGATTACCTCTCTAATTTGTCTGTGAATGATGGGGTGTCAGTAGAAATGAGGTCAATGATTATAGAAGTTTCAAAAGAATTCATTCATTGGAGTCAAGATTACAACAATGCAAGCATGAAAATGAAGTTTACTGAAGCTAGCCTGCTGAGAGCGGATGAAATAGAAGAGGGACTAGAAGCTAACAAGAATCATTTCAGGGAAGTCATGTCGTTGGAAAACGATTTGCACAGTCAGTTGGCCTACTTGGAGGAAAGAAAAAGAGAGCTAGAAGAGCAAATCAATGTCATTAAAGCTAACATTTCTGCTTCCGAATCAGCCAAGAAACAGGCTACAGATAAAAAAAGAGAAATCTTTAAAGAAGGAAAGATGCTCAAAGCTCAAAGAGATGAACTGAGAGAACAAATGCCTCGCTTGAAAGATGAGTGGGAATTGGCCAAGAAAATCCAAGCAAACATCAGAGCTGAATGGTCAAAACTGGGAGAAAAACTAAGCAAAAGCGCAAGTGGTGTAGAGTATATGGCTTTCATTTGGGTTTTAAGGTGCTTCTGTACTTGCCAAATATCTGACTCCATCTTCGAGGAAATACACGAGCTTCTTCTGAGTTTTGCAAAATTTGGAGCCAATGTTATGAACTTAAAAGATGTTATTACAAGGAGTGAAGAGGAAATGTGTTTTCTGCAAGAACTAATTGAAAGTTACTCCAGCTCTCTGAAGTCTGAATACAATTCCCAATCCCAAAGACTTTGTAGTGCAGAGGCAGCCTTAAGAAATGAAATGGAACCAACTCTGGATGATGTAGAAATGAGAACTTTTTATGCTTCTCTAGACGCTGAGGCCTCAGTTGTGTCACCTTCCGAAGATACCACGTTGGAATACCTTTCCAATCTGTCATCAGATGATGGAGTCTCGGTGGAATTGAAATTATTAATATTAGAAGTTTCAAGAGAATTTACCCGGTATAGTTGTGACAATAATGACGCTGATAGGCAAATCGACTCTGCCAGCACCAACTTGTTGAAAGTGGATAAACTAGAAGAGGGTCTTGAAACTAACAAGAACCAGTTCAAAGAAGTTGCATCATTAGAAAATGAGTTATGCAATCAGTTAGCCAATTTGGAGGAAAGAAAGAAAAAGTTGGAAGAGCAAATCAATAGCATAAAAGCTAATATTTATGTTTTTCAGTCAGCCAAGAACACAGCAACTAAGAGGAAGACATAA 5454 0.3951 MEIRTTFKCRCIARKQTPLGLCRSMNEMRSNWLAVAVTFEHVEKRLEEGGQNALNFKCTKILHGVDKSIACQTPEKICEPLSTKSKDGLIPLPERYRVLADLFEHMTCSLRLLHLRKKSQTFLNICTQVEVLAKRKFSYEHLAQIKYILPETIQIDKALVHDSKTLCMKPDLKITLVFEAEQENSSESPYMVVRQLFGSRLINFFNTHPEGSDIPEATLPEPFQQRTRSLICEDLLVDPSTSFSSTSNQIQPLPQKCQPYPFNRHFSKKNVVTNTENIQCFLSNQTALSCHSSNCLDNDGSKSESKWQKRSTASCLKSDSVTNQDMEEGQQKESCFLCFQPDVINTPARQICSPPSISCGSYESPDVKIASSIDNLMTETPAQSAPRRLMPSSDVKQIMTTQNSTSCNKPAKRVLDFSCMEGDNQELDISEDKLESSRTASDSIPEASRECNEDFDASSYVVLPQEVEESLGCSHEKTNKNQAALATWQQMSSSLLGLVDVIHSISCSVTCSQITKEELLHKIIMNSLDFVETREVEERIEFLEKVMPDWICKKLVPSGDIMYCIKKLSDLDSVRSMLISNYVVKTIMSSSFAHGWAYDVFLSFRGEDTRRSFTSSLHHALHQSGINAFIDDEKLRRGEEISPALLRAIEESRISIIVFSQNYASSTWCLEELVKILDCMKTRGQSVWPVFYNVDPSVVRHQRGSFGRAMAKHEARFKENTEKLHKWKRALSEAANLSGWSLENGYEYEFQLIQRIVEEVSGKLDHTLLHIAEYPVGLEARISEVKSLLQIEPHEHIRMIGIYGLGGIGKTTIARALFNSIADQFDAASFLADIRESSNQRQGLYLDSLTSMDLSHCEFLTKLPDISGVPNLTELNLDYCTNLEEVHDSVGFLEKLVELRAYGCTNLRVFPRAISLTSLKSLILNWCSSLQRFPDILGKMESLVSISIEASGIEELPPSIGNLIGLQELSMTSCLSLKELPESIDMLQNLRNLDIESCPQLRNFLKKLKGVGQRGTHTFDNVHSLNLENCGLLDEDLPIIFSCFPNLASLVLSGNNFVTLPSCIQEFLDLQLLHLDNCKQLQEIPGLPPYLQYINARNCTSLKAESSSLLLSQEYELQVVVPGTRIPNWFDLCSKGEYMTFWVRKKFPVITLCYVLAVKTEMKSFNCEIRFFINSEEVFEMEIPTLFPEMVTDHVWLYDLRTHPSVQWHNLDSYLENDWNQVEISCEKLSDAPNVTVSWCGIYVCKQEANVKDIRFTDPGLDSNSIADSDKIETESDKSMEDFEFSPKIEDNCCNVKDALEGCKTQESQMPECWGTTCKLRGDNTMAVLPTINFTRNQINLTPDDVEMEAFYASLDAETSVLLSDTTAIFQLANTKPSEETQKALKIFQEFLTKDFSDLLELGEYSTMKSTLDYLSNLSVNDGVSVEMRSMIIEVSKEFIHWSQDYNNASMKMKFTEASLLRADEIEEGLEANKNHFREVMSLENDLHSQLAYLEERKRELEEQINVIKANISASESAKKQATDKKREIFKEGKMLKAQRDELREQMPRLKDEWELAKKIQANIRAEWSKLGEKLSKSASGVEYMAFIWVLRCFCTCQISDSIFEEIHELLLSFAKFGANVMNLKDVITRSEEEMCFLQELIESYSSSLKSEYNSQSQRLCSAEAALRNEMEPTLDDVEMRTFYASLDAEASVVSPSEDTTLEYLSNLSSDDGVSVELKLLILEVSREFTRYSCDNNDADRQIDSASTNLLKVDKLEEGLETNKNQFKEVASLENELCNQLANLEERKKKLEEQINSIKANIYVFQSAKNTATKRKT 1817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1368 1817 SUPERFAMILY L domain-like 845 1107 - -
Glsi12g1368 1817 SUPERFAMILY Toll/Interleukin receptor TIR domain 587 740 IPR035897 -
Glsi12g1368 1817 MobiDBLite consensus disorder prediction 431 452 - -
Glsi12g1368 1817 Gene3D - 769 886 IPR027417 -
Glsi12g1368 1817 SMART till_3 597 737 IPR000157 GO:0007165
Glsi12g1368 1817 Pfam TIR domain 597 767 IPR000157 GO:0007165
Glsi12g1368 1817 Coils Coil 1533 1553 - -
Glsi12g1368 1817 Coils Coil 1484 1518 - -
Glsi12g1368 1817 SUPERFAMILY "Winged helix" DNA-binding domain 90 223 IPR036390 -
Glsi12g1368 1817 Coils Coil 1756 1801 - -
Glsi12g1368 1817 Gene3D - 592 768 IPR035897 -
Glsi12g1368 1817 ProSiteProfiles TIR domain profile. 596 764 IPR000157 GO:0007165
Glsi12g1368 1817 SMART CDT1_2 92 221 IPR014939 -
Glsi12g1368 1817 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 764 876 IPR027417 -
Glsi12g1368 1817 PANTHER DNA REPLICATION FACTOR CDT1 80 578 IPR045173 GO:0003677|GO:0030174|GO:0071163
Glsi12g1368 1817 Gene3D - 486 583 IPR038090 -
Glsi12g1368 1817 PRINTS Disease resistance protein signature 1065 1081 - -
Glsi12g1368 1817 PRINTS Disease resistance protein signature 799 814 - -
Glsi12g1368 1817 CDD Cdt1_m 90 230 IPR014939 -
Glsi12g1368 1817 FunFam Disease resistance protein (TIR-NBS-LRR class) 594 766 - -
Glsi12g1368 1817 Gene3D Ribonuclease Inhibitor 928 1118 IPR032675 -
Glsi12g1368 1817 Pfam DNA replication factor CDT1 like 92 156 IPR014939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1368 Glsi-ChrGlsi12 31018680 31034291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1368 376 578 Core DNA Replication Machinery Family AT2G31270 28.829 6.52e-16 81.3