Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1348 ATGCAAGTTATTACGGTAAGATTGCTTCACGTGTCGGGCTCCTTCTCAAGAGAAATGGCATCCATCCATAGGAATAGCCGAATAGGCAGGCAGTTTGATTTTCCAGAGCGAAGGGAAAATAATATCAGTCTTCAGGTTCCTGCAAAACCAACAAGTGTAGTTTCAAAGAAGATGGATAGAGAAATTAACGTAAGCCATGGTGATGATGCGCATGACATAGAAAATGAAGGTCCATTAGATGGGAAGGACATTGGGAGATGCTGGTCAGAGTTTTCTGAGAGAAATATGACATATGCAGGGCCACTTCTGGTGAAGAGGACTAACACCACATCCCAGATTGCCATAGTTGGTGCCAACCTTTGCCCCATCGAAAGCCTTGATTATGAGATTTTTGAGAATGAAATATTTAAACAGGACTGGAGGTCAAGGAAGAATGTTCAGATATTCCAGTATATGATACTTAAGTGGGGATTTGCTCTTCTTATAGGATTAGGTACAGGACTAGTTGGCTTCTTCAATAATATTGCTGTTGAGAATATAGCCGGTTTCAAGCTGCTTATGACGAGCAATCTCATGTCTAAACACAGATATTTTGAGGCTTTTCTAGCATATGCTGGTTGCAATATAGGCTTAGCAGCAGTAGCTGCAGCTCTTTGTGCTTTCATTGCTCCAGCAGCAGCAGGTTCTGGTATTCCTGAGGTGAAAGCCTATCTCAACGGTGTGGATGCTTATTCTATACTGGCTCCAAGCACTCTTTTTGTAAAGATTTTTGGTTCCATCCTTGGAGTTTCTGCCGGATTCGTGGTAGGCAAAGAGGGACCTATGGTACACACAGGTGCATGTCTAGCTTCTTTATTGGGGCAGGGCGGATCTCGCAAGTATGGCTTAACTTGGAGTTGGCTAAGGTATTTCAAAAATGACCGGGACCGGCGAGACATGATTACTTGTGGTGCTGCTGCCGGCGTTGCTGCTGCCTTCCGTGCTCCAGTTGGTGGCGTTCTCTTTGCCCTTGAAGAGGCAGCTTCATGGTGGCGGAGTGCTCTTCTTTGGAGGACATTTTTCACAACAGCAGTAGTTGCTATTGTTTTGAAAGCTGGAATTCAGTATTGCACCACTGGAAAATGTGGGCTATTTGGCGAAGGTGGTTTAATAATGTATGATGTCAGCTCAGCCAAAGTAACATTTAGTGGTGCAGATATAGTAGCAGTATTACTCCTAGGAGCCATTGGAGGCATTCTTGGAAGCATATATAATTACCTTGTGGATAAGGTTGTTCGTACCTATAGCATCATCAATGAAACAAGTGCAACTTTCAAAATCCTACTTGTTATTGCAATCGCTCTTTTAACATCATGCTGTTCTTATGGCCTACCATGGTTTGCAAAGTGCATCCCCTGTCCTACTGATCTGAGAGTGAGCTGCCCCACTGTTGATGAGTCTGGCAACTACAAGAACTTTCAATGTCCACCAGGCTATTACAACGATCTTGCTTCCCTCTTTCAAAACACCAATGATGATGCTATTCGCAACCTATTCAGCACCAGTACAACCAAAGAATTTCATATTTCCAGTCTTTTTGTCTTCTTTGCTGCTATTTACTGCCTTGGGATAATCACTTATGGTATTGCTGTTCCATCTGGGCTTTTCATTCCTGTGATTCTTGCTGGGGCTGCCTATGGCCGACTTGTTGGGAGACTATTTGAATCAATCTCCAAACTTGACACAGGACTATTTGCCCTCCTTGGAGCTGCCTCCTTCCTTGGTGGTACCATGAGAATGACAGTTTCCCTTTGTGTTATATTGCTTGAGCTCACCAATGATCTCTTGTTACTTCCACTTGTAATGTTGGTGTTATTAGTCTCAAAAACTCTCGCTGATAGCTTCAACATTGGTGTCTACGACCAAATACTGAAGATAAAAGGACTTCCTTATTTGGAGGCCCATGCAGAACCTTGTATGAGGAATTTAATTGCACGTGATGTTGTCTCTGGTCCATTAGTCACCTTTTGTGGTATTGAAAGTGTCGGGAATATACTACATGCTCTGAAAACTACAGGGCATAATGGGTTCCCTGTCATTGATGAACCACCTTTCTCAGATGCACCAGAGTTGTGCGGGCTTGTACTAAGGTCTCATTTGCTAGTGCTACTGAAGGGGAAGAACTTCTCAAAAGAGAGGGTGTTCACGAGTCGAAACATCTTACAGAGAATTTCAGCATTAGATTTTGCAAAGGCAGGATCAGGGAAAGGAATCAAACTGGAGGATCTAGATATCCAAGAGGAAGAGATGGATATGTATGTTGATCTCCATCCCATAACTAATGCATCCCCATACACGGTGGTTGAGACAATGTCACTCGCTAAAGCTGCTATTCTTTTCCGCAAACTTGGTCTTAGGCACATGTGTGTGGTTCCAAAGAGCCAAGGGAGACCTCCAGTTGTTGGGATTCTAACACGCCATGACTTCATGCCGGAGCATGTTTTGGGACTTTACCCTGAAATCAAGCCTCGCAAGTGGACTGAGTGA 2526 0.4371 MQVITVRLLHVSGSFSREMASIHRNSRIGRQFDFPERRENNISLQVPAKPTSVVSKKMDREINVSHGDDAHDIENEGPLDGKDIGRCWSEFSERNMTYAGPLLVKRTNTTSQIAIVGANLCPIESLDYEIFENEIFKQDWRSRKNVQIFQYMILKWGFALLIGLGTGLVGFFNNIAVENIAGFKLLMTSNLMSKHRYFEAFLAYAGCNIGLAAVAAALCAFIAPAAAGSGIPEVKAYLNGVDAYSILAPSTLFVKIFGSILGVSAGFVVGKEGPMVHTGACLASLLGQGGSRKYGLTWSWLRYFKNDRDRRDMITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAIVLKAGIQYCTTGKCGLFGEGGLIMYDVSSAKVTFSGADIVAVLLLGAIGGILGSIYNYLVDKVVRTYSIINETSATFKILLVIAIALLTSCCSYGLPWFAKCIPCPTDLRVSCPTVDESGNYKNFQCPPGYYNDLASLFQNTNDDAIRNLFSTSTTKEFHISSLFVFFAAIYCLGIITYGIAVPSGLFIPVILAGAAYGRLVGRLFESISKLDTGLFALLGAASFLGGTMRMTVSLCVILLELTNDLLLLPLVMLVLLVSKTLADSFNIGVYDQILKIKGLPYLEAHAEPCMRNLIARDVVSGPLVTFCGIESVGNILHALKTTGHNGFPVIDEPPFSDAPELCGLVLRSHLLVLLKGKNFSKERVFTSRNILQRISALDFAKAGSGKGIKLEDLDIQEEEMDMYVDLHPITNASPYTVVETMSLAKAAILFRKLGLRHMCVVPKSQGRPPVVGILTRHDFMPEHVLGLYPEIKPRKWTE 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1348 841 FunFam Chloride channel ClC3 147 463 - -
Glsi12g1348 841 Pfam CBS domain 776 822 IPR000644 -
Glsi12g1348 841 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 103 828 - -
Glsi12g1348 841 SUPERFAMILY CBS-domain pair 649 823 IPR046342 -
Glsi12g1348 841 Gene3D Clc chloride channel 147 645 - -
Glsi12g1348 841 ProSiteProfiles CBS domain profile. 772 833 IPR000644 -
Glsi12g1348 841 PRINTS Plant CLC chloride channel signature 354 364 IPR002251 GO:0005247|GO:0006821|GO:0016020
Glsi12g1348 841 PRINTS Plant CLC chloride channel signature 496 512 IPR002251 GO:0005247|GO:0006821|GO:0016020
Glsi12g1348 841 PRINTS Plant CLC chloride channel signature 129 137 IPR002251 GO:0005247|GO:0006821|GO:0016020
Glsi12g1348 841 PRINTS Plant CLC chloride channel signature 340 348 IPR002251 GO:0005247|GO:0006821|GO:0016020
Glsi12g1348 841 PRINTS Plant CLC chloride channel signature 372 379 IPR002251 GO:0005247|GO:0006821|GO:0016020
Glsi12g1348 841 Gene3D - 646 828 IPR046342 -
Glsi12g1348 841 Pfam Voltage gated chloride channel 212 625 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi12g1348 841 PRINTS Chloride channel signature 224 241 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi12g1348 841 PRINTS Chloride channel signature 255 274 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi12g1348 841 PRINTS Chloride channel signature 632 646 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi12g1348 841 PRINTS Chloride channel signature 319 338 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi12g1348 841 PRINTS Chloride channel signature 544 564 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi12g1348 841 PRINTS Chloride channel signature 576 592 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi12g1348 841 PRINTS Chloride channel signature 594 613 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Glsi12g1348 841 CDD CBS_pair_voltage-gated_CLC_euk_bac 657 825 - -
Glsi12g1348 841 CDD ClC_6_like 124 645 - -
Glsi12g1348 841 SUPERFAMILY Clc chloride channel 133 648 IPR014743 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1348 Glsi-ChrGlsi12 30850730 30856800 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1348 66 838 Ion Channels AT5G49890 72.294 0.0 1126