Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1343 ATGGCCACCACCCGGCGGCTGAGGGCATTCAAGCGATGGATGAAATCCGAGGGGATCGAATTTAGCGATGCACTGGAGTTCGTAGACAACCCGGAAGAGGGAATTTCTATGAGAGCATTGTGCCAATTGAAGGAAGGTGATGTTGTTGCTAGAATACCAAAGGATGCTTGTCTGACCATTAGAACCAGTGGGGCATATCAAATGCTTGCAGATGCTGGTATGGATGGTCATCTGGGGCTAGCGGCGGCTCTGATGTATGAGAAAAGCTTGGGCGAGGAGTCACCCTGGGCTGGTTACCTTCAGCTCTTGCCTCGCCAAGAATGCGTGCCGCTGGTTTGGACTCTGAATGAAGTAAACGAGCTATTGTGTGGGACTGAGCTACACAAGACAGTGCTAGAGGACAAATCTCTTATCTATGAGGACTGGTTAGAGAGTATTCTGCCCCTATTGGATTATGGAACTTTGGAGCTTAACCGAAAATTCTTTGGTGCAGAAGAATATTTTGCTGCAAAAAGTCTTGTTTCTTCGCGATCTTTTCAGATAGATGATTATCATGGTTTTGGCATGGTTCCCTTGGCAGATCTCTTTAATCATAAAACAGATGCCGAGGATGTGCATTTCACCTCCGTATCCTCTAAGTATGATTCGGACAATGATGATTGTATCACTGATCAAGAAGAATTGGTGCAAAATTTGTCTATAGATGAGATTGAGTTGGATACTGCTCCTGTTGGGAAATGCAGTGGTAGCAACTTGGAGTCATCTTCAGTTGTGGGAGGTGATCCTTCAATGCTGGAGATGATCATGATAAAAGATGTCAGCATTGGAGCTGAGGTGTTTAATACTTATGGACCAATGAGTAACGCTGCCTTACTTTATAGATATGGATTTGCTGAGCAAGATAATCCCTATGATATTGTGAACATTGATTTGGAACTAGTACTTAAGTGGTGTTCTTCGTTGTTTTCTGACCGATACAGTAGAGCAAGAGTCTCTATGTGGAGAAGGTTGGGCTATTCTGAATGTGTCGGCCAAAACTTGGAATATTTTGAGATCTCATCTGATGGAGAACCGGAGATTGAATTCCTTATTTTATTATACATCATGTTATTACCAGAAGATGCGTACCATGAGTTGGACCTTTCAGTATCAACGGCAGTAGATATTCATAAATCAAGTGAAATCACTATTTTAGGAGATTATATCATGTCAAAAAAAGCATCCAAGTTGAGCAAGGAGTTCTTGCTGACTAGAAATGTTTGTGATGCGCTATTGTCAATTGCTGATATGCGTGAGAGTCTCTATGGTCTGAACTCAGTAGAAGATGATATTGAGGCATTGGGGAGGTGTAGTCGTGTTAAGGAAAAGAAGCCGTTCTATTCTTTGGTGCTGCGCATTAGTGAAAGGAAGATTCTTGAAAAGCTCAGAAAATATGCTACCGAACCATTTAAAATTACTAAGCAAAGTTCTGCTAGGAAGAAGTTGAAAAGCACAACAAAGAAAAATTCCTAA 1512 0.4193 MATTRRLRAFKRWMKSEGIEFSDALEFVDNPEEGISMRALCQLKEGDVVARIPKDACLTIRTSGAYQMLADAGMDGHLGLAAALMYEKSLGEESPWAGYLQLLPRQECVPLVWTLNEVNELLCGTELHKTVLEDKSLIYEDWLESILPLLDYGTLELNRKFFGAEEYFAAKSLVSSRSFQIDDYHGFGMVPLADLFNHKTDAEDVHFTSVSSKYDSDNDDCITDQEELVQNLSIDEIELDTAPVGKCSGSNLESSSVVGGDPSMLEMIMIKDVSIGAEVFNTYGPMSNAALLYRYGFAEQDNPYDIVNIDLELVLKWCSSLFSDRYSRARVSMWRRLGYSECVGQNLEYFEISSDGEPEIEFLILLYIMLLPEDAYHELDLSVSTAVDIHKSSEITILGDYIMSKKASKLSKEFLLTRNVCDALLSIADMRESLYGLNSVEDDIEALGRCSRVKEKKPFYSLVLRISERKILEKLRKYATEPFKITKQSSARKKLKSTTKKNS 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1343 503 CDD SET_LSMT 24 298 - -
Glsi12g1343 503 Gene3D set domain protein methyltransferase, domain 1 3 297 - -
Glsi12g1343 503 ProSiteProfiles SET domain profile. 17 284 IPR001214 GO:0005515
Glsi12g1343 503 PIRSF RMS1_SET 1 482 IPR011383 GO:0016279|GO:0018026
Glsi12g1343 503 Pfam SET domain 34 284 IPR001214 GO:0005515
Glsi12g1343 503 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 6 432 - -
Glsi12g1343 503 SUPERFAMILY SET domain 5 302 IPR046341 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1343 1 502 NAC Transcription Factor Family AT3G56570 53.591 3.13e-180 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Glsi12g1343 SET 6.5e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g1343 12 30816604 30820053 Glsi12g1343 12 30816604 30820053 ECH