LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi12g1343	ATGGCCACCACCCGGCGGCTGAGGGCATTCAAGCGATGGATGAAATCCGAGGGGATCGAATTTAGCGATGCACTGGAGTTCGTAGACAACCCGGAAGAGGGAATTTCTATGAGAGCATTGTGCCAATTGAAGGAAGGTGATGTTGTTGCTAGAATACCAAAGGATGCTTGTCTGACCATTAGAACCAGTGGGGCATATCAAATGCTTGCAGATGCTGGTATGGATGGTCATCTGGGGCTAGCGGCGGCTCTGATGTATGAGAAAAGCTTGGGCGAGGAGTCACCCTGGGCTGGTTACCTTCAGCTCTTGCCTCGCCAAGAATGCGTGCCGCTGGTTTGGACTCTGAATGAAGTAAACGAGCTATTGTGTGGGACTGAGCTACACAAGACAGTGCTAGAGGACAAATCTCTTATCTATGAGGACTGGTTAGAGAGTATTCTGCCCCTATTGGATTATGGAACTTTGGAGCTTAACCGAAAATTCTTTGGTGCAGAAGAATATTTTGCTGCAAAAAGTCTTGTTTCTTCGCGATCTTTTCAGATAGATGATTATCATGGTTTTGGCATGGTTCCCTTGGCAGATCTCTTTAATCATAAAACAGATGCCGAGGATGTGCATTTCACCTCCGTATCCTCTAAGTATGATTCGGACAATGATGATTGTATCACTGATCAAGAAGAATTGGTGCAAAATTTGTCTATAGATGAGATTGAGTTGGATACTGCTCCTGTTGGGAAATGCAGTGGTAGCAACTTGGAGTCATCTTCAGTTGTGGGAGGTGATCCTTCAATGCTGGAGATGATCATGATAAAAGATGTCAGCATTGGAGCTGAGGTGTTTAATACTTATGGACCAATGAGTAACGCTGCCTTACTTTATAGATATGGATTTGCTGAGCAAGATAATCCCTATGATATTGTGAACATTGATTTGGAACTAGTACTTAAGTGGTGTTCTTCGTTGTTTTCTGACCGATACAGTAGAGCAAGAGTCTCTATGTGGAGAAGGTTGGGCTATTCTGAATGTGTCGGCCAAAACTTGGAATATTTTGAGATCTCATCTGATGGAGAACCGGAGATTGAATTCCTTATTTTATTATACATCATGTTATTACCAGAAGATGCGTACCATGAGTTGGACCTTTCAGTATCAACGGCAGTAGATATTCATAAATCAAGTGAAATCACTATTTTAGGAGATTATATCATGTCAAAAAAAGCATCCAAGTTGAGCAAGGAGTTCTTGCTGACTAGAAATGTTTGTGATGCGCTATTGTCAATTGCTGATATGCGTGAGAGTCTCTATGGTCTGAACTCAGTAGAAGATGATATTGAGGCATTGGGGAGGTGTAGTCGTGTTAAGGAAAAGAAGCCGTTCTATTCTTTGGTGCTGCGCATTAGTGAAAGGAAGATTCTTGAAAAGCTCAGAAAATATGCTACCGAACCATTTAAAATTACTAAGCAAAGTTCTGCTAGGAAGAAGTTGAAAAGCACAACAAAGAAAAATTCCTAA	1512	0.4193	MATTRRLRAFKRWMKSEGIEFSDALEFVDNPEEGISMRALCQLKEGDVVARIPKDACLTIRTSGAYQMLADAGMDGHLGLAAALMYEKSLGEESPWAGYLQLLPRQECVPLVWTLNEVNELLCGTELHKTVLEDKSLIYEDWLESILPLLDYGTLELNRKFFGAEEYFAAKSLVSSRSFQIDDYHGFGMVPLADLFNHKTDAEDVHFTSVSSKYDSDNDDCITDQEELVQNLSIDEIELDTAPVGKCSGSNLESSSVVGGDPSMLEMIMIKDVSIGAEVFNTYGPMSNAALLYRYGFAEQDNPYDIVNIDLELVLKWCSSLFSDRYSRARVSMWRRLGYSECVGQNLEYFEISSDGEPEIEFLILLYIMLLPEDAYHELDLSVSTAVDIHKSSEITILGDYIMSKKASKLSKEFLLTRNVCDALLSIADMRESLYGLNSVEDDIEALGRCSRVKEKKPFYSLVLRISERKILEKLRKYATEPFKITKQSSARKKLKSTTKKNS	503

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi12g1343	503	CDD	SET_LSMT	24	298	-	-
	Glsi12g1343	503	Gene3D	set domain protein methyltransferase, domain 1	3	297	-	-
	Glsi12g1343	503	ProSiteProfiles	SET domain profile.	17	284	IPR001214	GO:0005515
	Glsi12g1343	503	PIRSF	RMS1_SET	1	482	IPR011383	GO:0016279\|GO:0018026
	Glsi12g1343	503	Pfam	SET domain	34	284	IPR001214	GO:0005515
	Glsi12g1343	503	PANTHER	UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE	6	432	-	-
	Glsi12g1343	503	SUPERFAMILY	SET domain	5	302	IPR046341	-

Showing 1 to 7 of 7 entries

Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi12g1343	1	502	NAC Transcription Factor Family	AT3G56570	53.591	3.13e-180	514

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Glsi12g1343		SET	6.5e-07	No_clan

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Glsi12g1343	12	30816604	30820053	Glsi12g1343	12	30816604	30820053	ECH

Showing 1 to 1 of 1 entries