Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1341 ATGGACTCCAGAAATTTTCATATTAACAAGAGGCCAAGCCCTTCTCTAGCCTTGGAGGAGCTTAGGTCAGGGAGGAAGATAATAAGGTACAAGGAATGCCTCAAGAACCATGCGGCTGCAATAGGAGGCAATGCAACTGATGGGTGTGGTGAGTTCATGGCTGGTGGAGATGAAGGCACTCCTGAGGCTCTCAAGTGCTCAGCCTGCAATTGCCACAGAAACTTCCACAGAAAAGAGATACAGTCTGACTCTGATCATTCCCCTTCTCCATATTATCTCTCTCCTCTGCTTCCCAGTACAGCTCAGAATCCTTCTGATCAGTCTGATGAAGATGGGGTCAGAGAGGTGGAAAAGCCAGCTGATCAGACGGGGAGGAAGAGGTTCAGGACAAAGTTCAATCAAGAACAGAAAGAGAAGATGCTGAGGTTTGCAGAGAAGGCTGGGTGGAGCATACAGAAGCTGGAGGAATCTGTAGTGCAGCAGGATTTCTATGTTTTTTGTGTCATTGTTCCTTCTCTGTCTCTCTTATTCAGTGAGCTTAATGCAGTTAATGTAGTTCAGAGAGTCCAGTGTGGGTTTTCCAATTTTAGTGATGACTGCTACTGA 606 0.4637 MDSRNFHINKRPSPSLALEELRSGRKIIRYKECLKNHAAAIGGNATDGCGEFMAGGDEGTPEALKCSACNCHRNFHRKEIQSDSDHSPSPYYLSPLLPSTAQNPSDQSDEDGVREVEKPADQTGRKRFRTKFNQEQKEKMLRFAEKAGWSIQKLEESVVQQDFYVFCVIVPSLSLLFSELNAVNVVQRVQCGFSNFSDDCY 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1341 201 MobiDBLite consensus disorder prediction 80 129 - -
Glsi12g1341 201 Pfam ZF-HD protein dimerisation region 28 80 IPR006456 -
Glsi12g1341 201 Gene3D - 111 168 - -
Glsi12g1341 201 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 24 161 - -
Glsi12g1341 201 MobiDBLite consensus disorder prediction 108 129 - -
Glsi12g1341 201 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 30 79 IPR006456 -
Glsi12g1341 201 SUPERFAMILY Homeodomain-like 120 160 IPR009057 -
Glsi12g1341 201 MobiDBLite consensus disorder prediction 85 107 - -
Glsi12g1341 201 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 29 80 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1341 Glsi-ChrGlsi12 30805802 30806589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1341 25 185 ZF-HD Transcription Factor Family AT1G14440 43.350 9.21e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Glsi12g1341 ZF-HD_dimer 3.7e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g1341 12 30805802 30806589 Glsi12g1341 12 30805802 30806589 ECH