Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1338 ATGGTCGTAAGTGGAGGGAAGCCTTTGAAGCGGATGAAGAGGAGAGTCACAGCTGATTTCTACGATTTTCTCACGTTCCCATCGCCTTTGCTCGCCGGGGAGGAGGATTTCTCTGGCGGACCCTTCCGGACCAACGTACGCTCGTTCCTATCAAAGCACGCGCTGCTTCCCCCACCGTCGGCTCTTTTCCCTCACCTGCTGACGTGGCAGATCCTGTTCCGAGTTGGTGACCTGACGGACGGCCCGGAATCAAGCCCGGCGGTGGTCTGTCTCGACGTGGTCGAAGAAGATGTGGCCAGATCCAGATCAGTCTATTGCGATCAGTGCCGAGTTGTTGGTTGGAGTGGCCATCCAGTATGCGGGAAACGATACCATTTTATAATCAAGGTTGATGGTAGTTCGATTGGTGGGTACCACAAGCCATGTATGTGCTGTGGAGACATCTTGCATTTGTCAGAATCCAAGTGCAAGTCATGCAACCATGTGACAACCACAGATGATGTTGAAGACTGGGTCTATCACCAGTTAGAAAACACGTCTCATCTTTTACATGGTGTAGTCCATGCCAATGGTTATGGTCACCTGCTTCGGGTTAATGGCCGAGAAGGTGGCTCAAAATTTCTTTCTGGGTGCCATATCATGGATTTCTGGGATCGGCTTTGCAAGACACTTGGAGTTAGAAAAGTTAGCGTGATGGATGTGTCAAAGAAGTATGGGCTGGATTACCGCCTGCTCCATGCTATCACAAAGGGACATCCTTGGTATGGTGATTGGGGTTATCAATTTGGCTCTGGTAGCTTTGGTCTTACACACGAAGCATACAAGTCTGCTGTGGAATGCCTGTCCAATCTGCCCTTGTCCATTTTTCTCTCCCAGGGACAGAAACGTGACTCTCGTTTACAGGACATGATCTCATATTACCAGTCTTTGTCAAAGAATGAGCTTGTAAATATAAGGGACCTCTTTTGTTTTTTAATGGGTTTGATTCATGAAGCTCGCAAGACTGCATCAAGGGCTGATGACGTCACCTACAAGAAGCAACGTGTGAATGTTGCAGGAGTTTCGTCATCATGGGCAAAGAGTGATGTTGAACGTGTGGAAGAAGCCATGCTCAGAGTGCTGCGTGCTGTTTCTGGGTCCAATTGGGTGAGCTGGCGTGCTCTTAGGGGTGCTGTCTGCAAGGTGGCCTCTCCGGAGCTGCTTGATTACTGCCTTGGAGAACTTGGTGGGAAAGTGGTCCTTGGTGGAATAGTGAATACCCGATGCAATCCTGTTACTGGTGCTTTTGAGTGTAGACTAGAGAAGGCGAATAATTCTTGCTATGAAATTGCAAGCAATAATTCTTTGGGCCTAATGTATCCGTCTGAAGTGAATCTTCTACATGACTTGAAATATGTATACGAATCTGTGCTTCATCCTCAGATGATGCTGAGCTATGACCCAGAGGGGACAAGGGCACTTGCTATGTGCTCTGCTCAGAAACTTCTTGACTGCAAGCAGTTTGTTAAGGACTATAAACCTGAGACACTGCCAATGACAAACTTGTCTAAGATACGACTCTTGTGTCAATTAGAACTTGTGGACGAATCTAAAGATTCTGCCGCTGACACTCCCCCAGAATTAATTGTTCTGCCTGGAAATGCCACAGTGTCTGACCTCATGATTGAAGCAGCGAATGCTTTTCAAGATGTATATGTCATGTTTAGAAGATTTCAAGTTGATGAGCTTCTTGGCTATAGCGGTGTAGATGATTCCACCCTGGTCAAGCACTTGTTAGGGTCGACGGAAGTGGTTTGTGTGCAAGGAAGATGCGTTGGCAAGAATGGGTTGAACAAGTTTCAAATGGAACGGGGAATTGAGAGGTGGACTGTGGATTGCACCTGCGGGGCTAAGGATGATGATGGGGAGAGAATGTTAGCTTGTGATATATGTGGAGTGTGGCGGCACACTAGGTGTTCTGGTATTCATGATGCAGATCCTGTACCCGCGCGGTTTGTTTGCCCAAGATGCCTAAACTGTGACCCCAAACTCTAA 2034 0.4769 MVVSGGKPLKRMKRRVTADFYDFLTFPSPLLAGEEDFSGGPFRTNVRSFLSKHALLPPPSALFPHLLTWQILFRVGDLTDGPESSPAVVCLDVVEEDVARSRSVYCDQCRVVGWSGHPVCGKRYHFIIKVDGSSIGGYHKPCMCCGDILHLSESKCKSCNHVTTTDDVEDWVYHQLENTSHLLHGVVHANGYGHLLRVNGREGGSKFLSGCHIMDFWDRLCKTLGVRKVSVMDVSKKYGLDYRLLHAITKGHPWYGDWGYQFGSGSFGLTHEAYKSAVECLSNLPLSIFLSQGQKRDSRLQDMISYYQSLSKNELVNIRDLFCFLMGLIHEARKTASRADDVTYKKQRVNVAGVSSSWAKSDVERVEEAMLRVLRAVSGSNWVSWRALRGAVCKVASPELLDYCLGELGGKVVLGGIVNTRCNPVTGAFECRLEKANNSCYEIASNNSLGLMYPSEVNLLHDLKYVYESVLHPQMMLSYDPEGTRALAMCSAQKLLDCKQFVKDYKPETLPMTNLSKIRLLCQLELVDESKDSAADTPPELIVLPGNATVSDLMIEAANAFQDVYVMFRRFQVDELLGYSGVDDSTLVKHLLGSTEVVCVQGRCVGKNGLNKFQMERGIERWTVDCTCGAKDDDGERMLACDICGVWRHTRCSGIHDADPVPARFVCPRCLNCDPKL 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1338 677 Pfam PHD-finger 626 673 IPR019787 -
Glsi12g1338 677 SUPERFAMILY FYVE/PHD zinc finger 616 672 IPR011011 -
Glsi12g1338 677 SMART PHD_3 625 671 IPR001965 -
Glsi12g1338 677 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 610 674 IPR013083 -
Glsi12g1338 677 CDD PHD_MMD1_like 625 670 - -
Glsi12g1338 677 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 13 672 - -
Glsi12g1338 677 ProSitePatterns Uncharacterized protein family UPF0054 signature. 184 194 IPR020549 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1338 Glsi-ChrGlsi12 30789172 30794367 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1338 85 670 PHD Transcription Factor Family AT5G22260 29.677 1.38e-89 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Glsi12g1338 PHD 8.2e-08 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g1338 12 30789172 30794367 Glsi12g1338 12 30789172 30794367 ECH