Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1332 ATGAGAAGACATTCTAGACAAATGGAGTGCAATAAGGATGAGGCCACCAAAGCTAAAGAAATTGCTGAGAGGAAGTTTGTTGCAAAGGATATTTTGGGGGCAAAGAAGTTTGCTTTGAAGGCCCACAATTTATTTCCCGGGCTTGAGGGTATTCCTCAAATGTTAGCAACACTTGATGTGTATATTTCTGCAGGTAGTAAAATAAATGGTGAAGCAGATTGGTATGGTATACTTGGTGTTGATCCCCTGGCTGATGATGAAACGATCAGGAAACAGTACAGGAAGCTGGCTCTTACGCTTCACCCTGATAAGAACAAGTCCATTGGAGCTGATGGGGCATTTAAGCTTATTTCAGAGGCATGGAGTTTATTGTCTGATAAGGCTAAAAGGGTAGCATATGACCAGAAGAGTAATATAAAAGTACAGAAAGTTTCAACTAAGCCTGGAGGTTCATCAGCACGCCCCGGGGCTAATGGCAATTACAATTTTACTAAAACTGCCACTGCAAGTGCAAGAACTCATAAGAATACTGCTAAATCACATGCTTCAACTTCTATGCACAAGTCGAAATCAAATACATTTTGGACTGTTTGCCAACGATGCAAAATGCAGTACGAGTATCTTAGAGTTTATCTTAATCTTAAACTCCTGTGTCCCAACTGCCATGAGGCATTTTTGGCCGTAGAAACAGCTCCACCACCTGCAAGTGGTGTTAGACCTGCCACCTCATGGAACTTTTCCCCCCAGCAGCAGCAAAATTTCAATAACCAAGCACCTAGTAAAAACAAATCTAATGCAGGAAAGAACAAGACGACCCCAAATGTTGGAGCAGGTTGTTATAGTAATACTGACTCCTGTGACCATACTGATTTCCAGTGGGCTCCATTCTCAAGAACTTCTGGTGTTTCTTCGGTAGCTCAAGCTGCAAGTGTGGTTCAGCAGGCATATGAAAAAGTGAAGCGAGAGCGTGAGGAGGCACAAGCAGCTAGGAAAAGGGAGCAGGCCTTACGAAGGAAGCAGCATGCTTCAAAAAAGGGGCACTTTAATCCTGCAAAGAGAAGAAGGGGCATGGAGGATGCAAGTGCGAGCGGCCATGGTAAGGAGCCTGCAAATCAATCAGGAATGAGGAATGGAGTAGTAGGAGCATCTAACTCATGCGTTTCTAAACAGGGTAATTTTGAACCTAACTGGATAAATGGTTACTCTAAGACTGGCGGTGCAAGAGTTTTTTCCCAGCTTCAGCTTAATAATCTTCTTATGGAGAAAGCTAGAAAAGAAATTCGCAAGGAAATCCAGTCAAATACTGTTGCCAGAACAGCAGTGAAAGAGAGTGGAAATGGATACCAGAAAGCAAATGAGGAAGGAGAAAAATCTTTAAGAAACTCTGAGACATGTGATCAAAATAACATTGGGAAGTCGGAAGATATAAAGAGTGGATCCCATGCTATCAAGTCTTTTGCAGGCACTACTGTTACTAACACGGACATGGAAACTTTGGAAACAATGTCAATAGATGTCCCAGATCCTGATTTTCATGATTTTGATAAGGATCGAACTGAAAGATCTTTTAGTGAAAATCAAATATGGGCTGCATATGATGATGATGATGGGATGCCTCGATATTATGCTATGATTCACAGGGTGATTTCGTTGAATCCATTCAAGATGCGGATTAGTTGGCTCAACTCCAAGACCAACAGTGAACTGGGCCCTCTAAATTGGATTGTTTCAGGCTTTTCTAAAACTTGTGGGGATTTTAGAATTGGTAGATATGAAATCAATACCTCAATCAATTCTTTTTCTCACAAGGTTCGGTGGAGGAAAGGTACTCGAGGAGTCATTTGTGTTTATCCCAGGAAAGGGGATGTCTGGGCTCTCTATAGGAATTGGTCCCCTGACTGGAATGAGGTGACAGCAGATGAGGTGATACACAAGTATGACATGGTGGAAGTACTTGAGGATTTTAGTGAAGAACATGGTGTAGTTGTCACTCCCCTGGTCAAAGTGGCTGGTTTCAAGACAGTATTCCATCGGCACTTAGACCCAAGAGAAATTAGGATCATCACAAGGGAAGAGATGTTTCAGTTCTCTCATCAGGTCCCTTCATACTTACTCACAGGTAAAGAAGCTCCAAATGCCCCAAGGGGTTGCAGGGAGCTGGACCCAGCAGCTACTCCATCTGAACTTCTCCAGGTAATAGAAGTTGTAAAGGAGGAAGACGTGGTAGGCACAGAGGATAGTATTGTAGAAGAAACAGCAAGGGATAACATAAAAAGATCTAATGAAGAGGAAATGATCAATCGTATGGAAAAAGTTAAGGAAGGAAAGGATACAAATGATAAAGACATCCAAGAAATAGAAACATTGGAAGAGGAAAAAGAGAAGATAAGTGAGAGCAGCATGTAG 2406 0.4214 MRRHSRQMECNKDEATKAKEIAERKFVAKDILGAKKFALKAHNLFPGLEGIPQMLATLDVYISAGSKINGEADWYGILGVDPLADDETIRKQYRKLALTLHPDKNKSIGADGAFKLISEAWSLLSDKAKRVAYDQKSNIKVQKVSTKPGGSSARPGANGNYNFTKTATASARTHKNTAKSHASTSMHKSKSNTFWTVCQRCKMQYEYLRVYLNLKLLCPNCHEAFLAVETAPPPASGVRPATSWNFSPQQQQNFNNQAPSKNKSNAGKNKTTPNVGAGCYSNTDSCDHTDFQWAPFSRTSGVSSVAQAASVVQQAYEKVKREREEAQAARKREQALRRKQHASKKGHFNPAKRRRGMEDASASGHGKEPANQSGMRNGVVGASNSCVSKQGNFEPNWINGYSKTGGARVFSQLQLNNLLMEKARKEIRKEIQSNTVARTAVKESGNGYQKANEEGEKSLRNSETCDQNNIGKSEDIKSGSHAIKSFAGTTVTNTDMETLETMSIDVPDPDFHDFDKDRTERSFSENQIWAAYDDDDGMPRYYAMIHRVISLNPFKMRISWLNSKTNSELGPLNWIVSGFSKTCGDFRIGRYEINTSINSFSHKVRWRKGTRGVICVYPRKGDVWALYRNWSPDWNEVTADEVIHKYDMVEVLEDFSEEHGVVVTPLVKVAGFKTVFHRHLDPREIRIITREEMFQFSHQVPSYLLTGKEAPNAPRGCRELDPAATPSELLQVIEVVKEEDVVGTEDSIVEETARDNIKRSNEEEMINRMEKVKEGKDTNDKDIQEIETLEEEKEKISESSM 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1332 801 Coils Coil 772 799 - -
Glsi12g1332 801 CDD DnaJ 73 126 IPR001623 -
Glsi12g1332 801 Coils Coil 5 25 - -
Glsi12g1332 801 Pfam DnaJ domain 73 134 IPR001623 -
Glsi12g1332 801 MobiDBLite consensus disorder prediction 441 476 - -
Glsi12g1332 801 SUPERFAMILY Chaperone J-domain 67 133 IPR036869 -
Glsi12g1332 801 ProSiteProfiles dnaJ domain profile. 73 137 IPR001623 -
Glsi12g1332 801 PANTHER BNAC03G44070D PROTEIN 8 726 - -
Glsi12g1332 801 MobiDBLite consensus disorder prediction 233 274 - -
Glsi12g1332 801 MobiDBLite consensus disorder prediction 366 383 - -
Glsi12g1332 801 MobiDBLite consensus disorder prediction 334 351 - -
Glsi12g1332 801 MobiDBLite consensus disorder prediction 769 801 - -
Glsi12g1332 801 Pfam Domain of unknown function (DUF3444) 502 709 IPR024593 -
Glsi12g1332 801 Gene3D DnaJ domain 70 193 IPR036869 -
Glsi12g1332 801 MobiDBLite consensus disorder prediction 322 383 - -
Glsi12g1332 801 MobiDBLite consensus disorder prediction 240 274 - -
Glsi12g1332 801 ProSitePatterns Nt-dnaJ domain signature. 114 133 IPR018253 -
Glsi12g1332 801 Coils Coil 309 339 - -
Glsi12g1332 801 SMART dnaj_3 72 129 IPR001623 -
Glsi12g1332 801 PRINTS DnaJ domain signature 75 93 IPR001623 -
Glsi12g1332 801 PRINTS DnaJ domain signature 109 129 IPR001623 -
Glsi12g1332 801 PRINTS DnaJ domain signature 129 148 IPR001623 -
Glsi12g1332 801 PRINTS DnaJ domain signature 93 108 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1332 Glsi-ChrGlsi12 30735945 30738350 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1332 2 249 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 31.907 4.03e-32 126