Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1321 ATGGGTTTTTCAGTACTTCTTCTCTTGTCTCTCCTAGTTTTTCTCTTTTACTCAACATGTGTTCGTGGGAATGCGGAGCTTAGAGCTCTCATGGATATAAAAGCCGCTTTGGACCCAGAAGACCATTTTCTATCTTCGTGGACCACCAATGGGAACCCGTGTGACGCTTCCTTTGAAGGACTGGCTTGCAATGAGAGGGGTCAGGTTGCAAACATTTCGCTGCAGGGAAAGGGCCTTTCGGGCAAGCTCTCGCCTGCCATTGATGGGCTGAAGTACTTAACAGGACTATACTTGCATTATAACGCTTTGTACGGAGAGATACCCACAGAAGTTGCAAACTTGGCTCAGCTAACTGATTTGTATCTGAATTTCAATCACCTGACTGGGGAAATTCCTCCTGAGATCGGCAAAATGGAGAACCTGCAAGTTTTGCAGCTTTGCTATAATCAGTTGAAAGGAAGCATACCTACTCAGCTTGGTGCTCTGAAGAAGCTTAGTGTTCTTGCTCTGCAGTCAAATCAATTAACTGGTGCTATCCCTGCTAGTTTAGGTGATTTGGGAATGTTAATGAGGCTAGATTTGAGCTCTAATCGCCTATTTGGTTCCGTTCCCACTAGACTAGCAGATGCTCCTTTGTTGCAAGTTCTAGACGTTCGCAACAATACTCTTTCTGGGAATGTACCTCCAGCTCTGAAGAGACTAGAAGATGGATTTTTGTATGAATACAATCTGGGATTGTGTGGATCTGGGTTTTCATCCCTAAAAACTTGCAGTGCTTCAAATCATGCCAATCCCAGAAGACCTGAACCTTATGGAGCAGGTGTAGATGGTCTACCTACAAGAGATATCCCGGAAACTGCAAATGTTCAGTTGCCTTGCAATGGAACTCGATGCCAACAAAACTCATCAAAATCCAAACATACAAAGTCTATTACTATTGGCATAATTTTGGTTATGATTGCAGTATCAGCAATTGGTATCCTAACCTTCACACAATATCGCCGGCGAAAACAAAAACTCGGAAACTCTTTTGATATCTCTGATAGCCGGCTAAGCACTGATCAAGCCAAGGGTATATACAGGAAAAATGGGTCTCCTTTGATCAGCCTTGAGTATTCCCATGGATGGGACCCTTTGGCTGATACCCGGAATTTCTATGGGGATAGCCAAGATATGTTCCAAAGTTTCAGGTTCAACTTGGAAGAGGTGGAAACTGCTACTCAGTATTTCTCAGAGTTGAATTTGTTAGGAAAGAGTAACTTTAGTGCAACTTATAAAGGAGTGTTAAGAGATGGGTCTGTTGTTGCTGTCAGGAGCATCAGCAAAACTAGTTGCAAGTCAGATGAAGCTGAGTTTTTGAAGGGATTGAACATTTTGACCTCTCTGAGGAATGAGAACTTAGTGAGGTTGAGAGGATTTTGTTGTTCAAGGGGACGAGGTGAGTGCTTTCTGATTTATGATTTTGTTCCTAATGGAAATCTGTCGCACTACCTTGATGTGAAGGAAGGTGATGTAGAAGTCCCTGAATGGTCAACTAGAGTTTCTATTGTGAAAGGGATTGCTAAAGGTATAGCATATTTACATGCACACAAAGCAAACAAACCAGCACTTGTTCACCAAAACATCTCAGCAGAGAAAGTGCTCATTGATCAGCGATTTAACCCATTGCTTTTGGGTTCTGGCCTGTCCAAGATCCTTACTAATGATATTGTCTTCTCAGCACTTAAGGCTAGTGCAGCTAAGGGTTATCTAGCTCCAGAATACACCACTACCGGCCGGTTCACCGATAAAAGTGATGTGTATGCTTTTGGAGTGCTTCTTTTCCAGATCCTCTCAGGGAAGCAGAAGGTCACTAGCTCAATGCGCCTTGCTGCTGAATCCTTCAGATTCCAAGAATTTATGGACCCAAATCTCCATGGCAGATTCTTTGAATATGAGGCAGCTAAGCTCTCAAAAATGGCTCTGCTTTGTTCCCACGAGTCTCCTTTTGAGAGGCCATCCATGGAAGCCATTGTTCAAGAACTGGGCAATTGGTCTTGGATGGAAGCTTGTAAGCTTAGAGAAGGGGTTTTATGGGGCATTTCTTTTCTCTAA 2094 0.4322 MGFSVLLLLSLLVFLFYSTCVRGNAELRALMDIKAALDPEDHFLSSWTTNGNPCDASFEGLACNERGQVANISLQGKGLSGKLSPAIDGLKYLTGLYLHYNALYGEIPTEVANLAQLTDLYLNFNHLTGEIPPEIGKMENLQVLQLCYNQLKGSIPTQLGALKKLSVLALQSNQLTGAIPASLGDLGMLMRLDLSSNRLFGSVPTRLADAPLLQVLDVRNNTLSGNVPPALKRLEDGFLYEYNLGLCGSGFSSLKTCSASNHANPRRPEPYGAGVDGLPTRDIPETANVQLPCNGTRCQQNSSKSKHTKSITIGIILVMIAVSAIGILTFTQYRRRKQKLGNSFDISDSRLSTDQAKGIYRKNGSPLISLEYSHGWDPLADTRNFYGDSQDMFQSFRFNLEEVETATQYFSELNLLGKSNFSATYKGVLRDGSVVAVRSISKTSCKSDEAEFLKGLNILTSLRNENLVRLRGFCCSRGRGECFLIYDFVPNGNLSHYLDVKEGDVEVPEWSTRVSIVKGIAKGIAYLHAHKANKPALVHQNISAEKVLIDQRFNPLLLGSGLSKILTNDIVFSALKASAAKGYLAPEYTTTGRFTDKSDVYAFGVLLFQILSGKQKVTSSMRLAAESFRFQEFMDPNLHGRFFEYEAAKLSKMALLCSHESPFERPSMEAIVQELGNWSWMEACKLREGVLWGISFL 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1321 697 Gene3D Transferase(Phosphotransferase) domain 1 489 687 - -
Glsi12g1321 697 FunFam Protein NSP-INTERACTING KINASE 2 381 488 - -
Glsi12g1321 697 FunFam Protein NSP-INTERACTING KINASE 2 136 258 - -
Glsi12g1321 697 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 72 675 - -
Glsi12g1321 697 FunFam Protein NSP-INTERACTING KINASE 2 489 679 - -
Glsi12g1321 697 Gene3D Phosphorylase Kinase; domain 1 382 488 - -
Glsi12g1321 697 Pfam Leucine rich repeat 140 199 IPR001611 GO:0005515
Glsi12g1321 697 ProSiteProfiles Protein kinase domain profile. 410 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1321 697 SUPERFAMILY L domain-like 25 233 - -
Glsi12g1321 697 FunFam Leucine-rich repeat receptor-like kinase 25 134 - -
Glsi12g1321 697 SUPERFAMILY Protein kinase-like (PK-like) 392 677 IPR011009 -
Glsi12g1321 697 Gene3D Ribonuclease Inhibitor 180 238 IPR032675 -
Glsi12g1321 697 Gene3D Ribonuclease Inhibitor 23 179 IPR032675 -
Glsi12g1321 697 Pfam Protein tyrosine and serine/threonine kinase 414 675 IPR001245 GO:0004672|GO:0006468
Glsi12g1321 697 Pfam Leucine rich repeat N-terminal domain 24 64 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1321 Glsi-ChrGlsi12 30696739 30700281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1321 7 523 Miscellaneous Gene Families AT4G22730 55.598 0.0 570
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Glsi12g1321 PK_Tyr_Ser-Thr 1.2e-33 CL0016