Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1315 ATGGAAGAAAAGGAGAGTTTTGTTTCTGGGGTCGGCGTGAAGGGTGACGAAGCCCCGGGGAGCTACGACGTTGCTCCGAGAAGTGAAAATTGTGGTCAGTTTGGCGGGACCACAGGGGCGGCGCCGGCTCCAGCTCCAGCTCCGTCTCCGGCTCCGGCTCCGGCTCTGTCTCCGGCGCCAGTCAGTGTGGGGGCGACACCGAGTACGAAAGTAAAGAAGAAAAGGGGTAGGCCTAGAAAGTATGCGCCTGACGGCACAGTAGCGTTGCCGTTGTCGCCGATGCCAATCTCATCGTCAATTCCGTTGACCGGTGAGTTCTCAGCGTGGAAACGGGGTAGAGGGCGGCCAGTTGAATTGATCAAGAAGTCATATAAGTACGAATTTGAAAGTACAGGACCAGGTGAAGGAATTGCATACTCGGTTGGTGCCAATTTCACACCCCATGTGCTAACGGTTAATGCTGGCGAGGATGTTACTATGAAGGTAATGTCCTTCTCTCAACAAGGGTCTCGTGCTATTTGTATTCTTTCTGCAAATGGAACAATTTCAAATGTTACACTTCGTCAACCTACTTCTTCTGGGGGTACTTTAACATATGAAGGGCGGTTTGAGATTCTTTCCTTGTCTGGTTCCTTTATGCCAACTGAGAATGGACTAACAAGAAGCAGATCTGGTGGGATGAGTGTCTCTTTGGCAGGTCCAGATGGACGAGTGGTGGGAGGTGGCCTTGCTGGTCTGTTGGTAGCAGCAGGCCCAGTGCAGGTTGTCGTGGGCAGTTTTCTTCCAGGTCACCAGCAGGAGCAGAAACCCAAGAAGCAAAAGATTGAGCATATATCAGCTATTACCTCTGCACATATCAATCCCATCTCTGTTGAAGAAATAAAAGTCAGTTTTGGAGGAGTAAAGCCTATTGTGACGCCTGCTGCTTTCCAAGGGGACAGTATTGCTTCTTTTAACAATGTCCAGGGCTTTAGGAACTCATCTGCTGATGATAAAACATCTTTGCCTGAAAAGGAGTCTAACCCCACGCAAACAAATGCTGGAGTTGCATGCTAA 1056 0.4972 MEEKESFVSGVGVKGDEAPGSYDVAPRSENCGQFGGTTGAAPAPAPAPSPAPAPALSPAPVSVGATPSTKVKKKRGRPRKYAPDGTVALPLSPMPISSSIPLTGEFSAWKRGRGRPVELIKKSYKYEFESTGPGEGIAYSVGANFTPHVLTVNAGEDVTMKVMSFSQQGSRAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSFMPTENGLTRSRSGGMSVSLAGPDGRVVGGGLAGLLVAAGPVQVVVGSFLPGHQQEQKPKKQKIEHISAITSAHINPISVEEIKVSFGGVKPIVTPAAFQGDSIASFNNVQGFRNSSADDKTSLPEKESNPTQTNAGVAC 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1315 351 Gene3D - 147 282 - -
Glsi12g1315 351 FunFam AT-hook motif nuclear-localized protein 1-like 147 278 - -
Glsi12g1315 351 ProSiteProfiles PPC domain profile profile. 142 281 IPR005175 -
Glsi12g1315 351 SUPERFAMILY AF0104/ALDC/Ptd012-like 144 267 - -
Glsi12g1315 351 MobiDBLite consensus disorder prediction 43 57 - -
Glsi12g1315 351 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 43 322 IPR039605 GO:0003680
Glsi12g1315 351 MobiDBLite consensus disorder prediction 326 351 - -
Glsi12g1315 351 CDD DUF296 146 260 IPR005175 -
Glsi12g1315 351 MobiDBLite consensus disorder prediction 1 94 - -
Glsi12g1315 351 Pfam Plants and Prokaryotes Conserved (PCC) domain 147 260 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1315 Glsi-ChrGlsi12 30660086 30665847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1315 66 308 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 62.055 4.38e-96 289
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi01g1685 01 77950245 77954601 Glsi12g1315 12 30660086 30665847 CCT
Glsi01g1685 01 77950245 77954601 Glsi12g1315 12 30660086 30665847 ECH
Glsi12g1315 12 30660086 30665847 Glsi12g1315 12 30660086 30665847 ECH