Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1307 ATGGAAGATGATGGTCTGGCGTTATTCTATGCGGCCCGGCTGAGGAGGGAGTTTAAGTCATTTTTAGTCGTGGCTCTGTTCTTGCTTCTCCTTCCATTTGCTTCGCCTCTCAGTGAGGAAGGTGTGTATCCATTGTTATTTTGCCTCGCCCATAAATATTCTAGGTTCATTTCACTCAACCCGCGAGTCTTTCCTGCATTATGTTTTTTGCTTTCCGTTTTGTTTCTTCTTTGTGATCTTACTACTGCTAATTTGAGCCCCATTTGTAGCCTGAAACAGTCTGAGGATGATGCCAGACAAACCTTAATGACGATCAAGGCCTCCTTCAGTAACGTAGCAGACGTGTTGCTTGATTGGGATGATGTACATAACGATGACTTCTGTTCTTGGCGTGGTGTCTACTGTGATAATATCAGCGTTACTGTGCTGACCCTGTCGGGGAATGAACTAAGTGGTCAAATTCCAGATGAAATTGGAAATTGTGCTGCACTTATCCATCTAGATTTGTCTGATAACGAGCTTTATGGGGATGTACCTTTCTCATTATCAAAGCTAAAGCAACTGGAGTTTCTGAATTTAAAGAATAATCAGTTGACTGGTCCTATCCCTTCAACATTATCCCAGATTCCAAATCTGAAAATCCTTGATCTTGCTCGAAATCGGCTCACCGGTGAGATACCGAGACTGCTCTATTGGAATGAAGTCCTCCAATACCTGGATATATCATATAACCAGATTACTGGGGAGATTCCTTACAATATTGGATTCCTACAAGTGGCGACTTTGTCACTTCAAGGAAATAGGCTTACTGGGAAAATTCCTGATGTTATTGGTTTGATGCAAGCTCTTGCTATTTTGGATTTGAGTGAGAATGAATTGGTTGGACCAATCCCTTCAATACTTGGCAATTTGACTTTTACTGGCAAACTGTACCTTCATGGAAACATGCTTTCTGGTCCTATACCACCAGAACTTGGCAATATGTCGAAACTAAGTTATCTGCAATTGAATGGCAACCAGCTAGTTGGCAGGATCCCTAAAGAACTTGGGAAACTCGAACATTTATTTGAATTGAATCTTGCCAACAATCATCTTGAAGGACCTATCCCACATAACATCAGTTCTTGCACGGCCTTGAATCAGTTCAATGTGCATGGTAATCATTTGAGCGGATCCATTCCTTTGAGCTTTCAGAACCTTGAGAGTTTGACATACCTAAATGTCTCTGCTAACAACTTCAAAGGGAACATACCTGTTGAATTGGGACACATCATAAATCTTGATACACTTGACATTTCATACAACAATCTTTCGGGTAACATCCCTCCTGAAATGGGTCTTCTGCAGAACCTTGTGTCTCTAAATGTCTCTTATAATAATTTATCTGGAGTTATTCCTTCTGCGAGGAATTTCTTGCGGTTTTCGGCTGACAGCTTCATTGGAAATCCATTTTTATGTAGTAAAAGGATAGGATCAATGTGTGGTCCTTGCACACCAAAATCCAGATTGATGTTTTCCAGGGCTGCAGTTCTTGGTCTCACACTGGGTATCATCACATTGTTGATGATGCATCCCCATAACTTGCGGGCGTTTGAAACAGAACTTGAAACTGTTGGCAGCATCAGACATAGAAATCTTGTCACCTTGCATGGTTATGCACTAACTCCCAATGGAAATCTCCTTTTCTATGACTATATGGAGAACGGCTCTCTGTGGGATCTTCTTCATGGTCCCTTGAAGAAGGTAAAACTTGATTGGGAAACTCGCTTGAGGATTGCAGTTGGAGCTGCTGAAGGACTTGCTTATCTCCATCACGATTGCAACCCTCGAATCATTCATAGGGATATAAAGTCCTCAAATATTTTGCTGGATGAGAACTTTGAGCCTCGCCTCTCCGATTTTGATAATAACTCTGTGATGGAAACTGTGGATCCAGAAGTCTCTGTAACGTGCATGGATCTGGCCCATGTTAAGAAGACCTTTCAGCTCGCTCTGCTCTGCACAAAAAGAAACCCTTCTGAGAGGCCTACCATGCATGAGGTTGCTAGGGTTTTGGGGGCACTTCTTCTATTGGAGTATTTGACTCTTTTTCTGGTAGAAAGACCACGTGTATTAGCTGAAGCCACGTGTATTAGCTGA 2139 0.4208 MEDDGLALFYAARLRREFKSFLVVALFLLLLPFASPLSEEGVYPLLFCLAHKYSRFISLNPRVFPALCFLLSVLFLLCDLTTANLSPICSLKQSEDDARQTLMTIKASFSNVADVLLDWDDVHNDDFCSWRGVYCDNISVTVLTLSGNELSGQIPDEIGNCAALIHLDLSDNELYGDVPFSLSKLKQLEFLNLKNNQLTGPIPSTLSQIPNLKILDLARNRLTGEIPRLLYWNEVLQYLDISYNQITGEIPYNIGFLQVATLSLQGNRLTGKIPDVIGLMQALAILDLSENELVGPIPSILGNLTFTGKLYLHGNMLSGPIPPELGNMSKLSYLQLNGNQLVGRIPKELGKLEHLFELNLANNHLEGPIPHNISSCTALNQFNVHGNHLSGSIPLSFQNLESLTYLNVSANNFKGNIPVELGHIINLDTLDISYNNLSGNIPPEMGLLQNLVSLNVSYNNLSGVIPSARNFLRFSADSFIGNPFLCSKRIGSMCGPCTPKSRLMFSRAAVLGLTLGIITLLMMHPHNLRAFETELETVGSIRHRNLVTLHGYALTPNGNLLFYDYMENGSLWDLLHGPLKKVKLDWETRLRIAVGAAEGLAYLHHDCNPRIIHRDIKSSNILLDENFEPRLSDFDNNSVMETVDPEVSVTCMDLAHVKKTFQLALLCTKRNPSERPTMHEVARVLGALLLLEYLTLFLVERPRVLAEATCIS 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1307 712 Pfam Leucine rich repeat N-terminal domain 96 136 IPR013210 -
Glsi12g1307 712 SUPERFAMILY L domain-like 127 489 - -
Glsi12g1307 712 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 370 494 - -
Glsi12g1307 712 SMART serkin_6 505 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1307 712 Pfam Leucine rich repeat 139 198 IPR001611 GO:0005515
Glsi12g1307 712 Gene3D Ribonuclease Inhibitor 371 496 IPR032675 -
Glsi12g1307 712 Gene3D Ribonuclease Inhibitor 258 370 IPR032675 -
Glsi12g1307 712 ProSiteProfiles Protein kinase domain profile. 484 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1307 712 Gene3D Ribonuclease Inhibitor 207 257 IPR032675 -
Glsi12g1307 712 Gene3D Ribonuclease Inhibitor 96 206 IPR032675 -
Glsi12g1307 712 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 386 680 - -
Glsi12g1307 712 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 257 345 - -
Glsi12g1307 712 ProSiteProfiles Leucine-rich repeat profile. 426 448 IPR001611 GO:0005515
Glsi12g1307 712 Pfam Leucine Rich repeat 235 249 IPR001611 GO:0005515
Glsi12g1307 712 Pfam Protein kinase domain 529 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1307 712 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 95 256 - -
Glsi12g1307 712 Gene3D Transferase(Phosphotransferase) domain 1 518 644 - -
Glsi12g1307 712 ProSiteProfiles Leucine-rich repeat profile. 211 233 IPR001611 GO:0005515
Glsi12g1307 712 SMART LRR_typ_2 185 208 IPR003591 -
Glsi12g1307 712 SMART LRR_typ_2 400 424 IPR003591 -
Glsi12g1307 712 SMART LRR_typ_2 448 470 IPR003591 -
Glsi12g1307 712 SMART LRR_typ_2 209 233 IPR003591 -
Glsi12g1307 712 SMART LRR_typ_2 280 308 IPR003591 -
Glsi12g1307 712 SMART LRR_typ_2 328 351 IPR003591 -
Glsi12g1307 712 SMART LRR_typ_2 352 376 IPR003591 -
Glsi12g1307 712 ProSitePatterns Serine/Threonine protein kinases active-site signature. 611 623 IPR008271 GO:0004672|GO:0006468
Glsi12g1307 712 FunFam Protein kinase superfamily protein 566 637 - -
Glsi12g1307 712 SUPERFAMILY Protein kinase-like (PK-like) 523 685 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1307 Glsi-ChrGlsi12 30599574 30606522 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1307 631 689 Receptor kinase-like Gene Family AT5G62230 74.576 7.45e-21 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Glsi12g1307 Pkinase 1.4e-18 CL0016