Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1303 ATGCCTTCTCTACTTGTCTCTGATGCTGTTCTCTCTGAGACTCCCAAAGATAAGAAGGAGAAGAAGAAGAAGACGAAGAACCAGACTCTAATTGAAGAAGATGGGTTTTCGGACGAGAAGAAGAAGAAGATGAAGAACCAGACTCTAATTGAAGAAGATGGGTTTTCGGACAAGAAGAAGAAGAAGAAGGAGAGCAAGAAACGTAAGGCTTTGGATGTTGAGGTGATGATGAATGGAGATGAAGAGAAGAGTGAGACTAGCTCCGAGCTGGTTGAGCCCGAACGTTCAAACGCTAAGAGTGGGGAGAAGAGGAAGAAGAAAAAGGCCAAGTTGGACGAGTATGAAGTAGAAGAGGAAGAGGTTCAGAAGGAGGACCCTAATGCCGTTGCCAACTTTAGGATATCGGAGCCGTTGAAGGCGAAGTTGAAGGAGAAGGGGATTGAATCGTTATTCCCCATTCAGGCCATGACTTTTAATACCGTTCTCGATGGCTCTGATTTGGTTGGTCGGGCTCGCACCGGGCAGGGTAAAACTTTGGCCTTTGTATTGCCCATATTAGAGTCTTTGACAAACGGTCCAGCAAAAGCATCAAGAAAGACTGGATATGGGAGGTCTCCAAGTGTTTTAGTGCTTTTACCTACTAGAGAATTGGCCTGTCAGGTTTATGCTGATTTTGAACTCTATGGTGGTGCACTGGGATTGATTTCCTGCTGTTTATATGGTGGAGCTCCTTATCAAGCTCAAGAATTTAAACTCAAGAGAGGCATTGATATTGTTGTTGGAACTCCAGGCCGTATAAAGGATCACATCGAGAGGGGAAATATTGACCTGAGCCAACTAAAGTTCCGCGTCCTTGATGAGGCAGATGAGATGCTGAGGATGGGTTTTGTTGACGATGTTGAGCTCATTCTGGGTAAGGTAGATGATGTCAGTAAAGTTCAGACACTTCTTTTCAGTGCTACTTTGCCAGATTGGGTTAAACGTATTGCTGCAAGATTTCTGAAATCAGACAAGAAAACTGCTGACCTTGTTGGGAATGAGAAAATGAAAGCTAGCATCAATGTTAGGCATATTGTTCTCCCATGTTCTAGTGCTGCTAGGTCCCAGCTTATCCCAGATGTTATACGCTGCTATAGCAGCGGAGGCCGAACAATTATATTTACTGAGACAAAGGAGTCTGCTTCTGAGCTAGCAGGGTTGTTGCATGGTGCACGACCTCTGCATGGTGATATTCAGCAGTCACAACGTGAGGTTACATTGTCTGGTTTCAGGTCTGGGAAATTTAAGACATTAGTGGCCACAAATGTGGCAGCTCGGGGTTTGGACATTAATGATGTTCAGTTAATTATCCAGTGCGAGCCTCCACGCGATGTTGAAGACTATATCCATCGATCTGGGCGCACTGGAAGAGCAGGTAATACTGGAGTCGCTGTTATGCTATATGATCCAAGAAGGTCAAATATATCTAAAATAGAACGAGAATCTGGTGTGAAATTTGAACACATATCTGCTCCCCAGCCTGCTGATATTGCCAAAGCTGTTGGTGGGAATGCTGCTAAAATGATAACCCAAGTTTCTGATAGTGTGATTCCTGCATTCAAATCTGCTGCCGAAGATCTTTTGAACTGCTCAGATTTATCAGCTGTTGAATTACTTGCAAAAGCTCTTGCCAAGGCTGTTGGTTATACTGAGATAAAGAAAAGATCGCTTCTCACTTCCATGGAGAACCATGTCACATTGCTTCTTGAGATTGGAAAGCCCGTCTTCACACCATCTTTTGCATTTGGAATCCTGAGGAGATTCTTGCCTGAGGATAAGGTTGACGCGGTAAAGGGTCTTACTCTCACTGCAGATGGAAATGGTGCTGTTTTTGATGTACCAGCTGAAGATTTGAATACATTTCTTGCGGGTCAGGAAAATGCTGCAAATGTAAGCTTAGAGGTGTTAAAAGAGTTGCCACAATTGCAAGAAAGAGAACAATCCAGAGGCAGATTTGGTGGTGGCCGTGGTGGCAGTGGTAACAGGTTTTCTGGTGGAAGGGGTGGCAAGCATGGTTGGTTTTCCAATGGTTCCGGGGGTGGGAGAGGCCGTGGCAACAGGGGAGGAAAGAGATGGTGA 2118 0.4481 MPSLLVSDAVLSETPKDKKEKKKKTKNQTLIEEDGFSDEKKKKMKNQTLIEEDGFSDKKKKKKESKKRKALDVEVMMNGDEEKSETSSELVEPERSNAKSGEKRKKKKAKLDEYEVEEEEVQKEDPNAVANFRISEPLKAKLKEKGIESLFPIQAMTFNTVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKASRKTGYGRSPSVLVLLPTRELACQVYADFELYGGALGLISCCLYGGAPYQAQEFKLKRGIDIVVGTPGRIKDHIERGNIDLSQLKFRVLDEADEMLRMGFVDDVELILGKVDDVSKVQTLLFSATLPDWVKRIAARFLKSDKKTADLVGNEKMKASINVRHIVLPCSSAARSQLIPDVIRCYSSGGRTIIFTETKESASELAGLLHGARPLHGDIQQSQREVTLSGFRSGKFKTLVATNVAARGLDINDVQLIIQCEPPRDVEDYIHRSGRTGRAGNTGVAVMLYDPRRSNISKIERESGVKFEHISAPQPADIAKAVGGNAAKMITQVSDSVIPAFKSAAEDLLNCSDLSAVELLAKALAKAVGYTEIKKRSLLTSMENHVTLLLEIGKPVFTPSFAFGILRRFLPEDKVDAVKGLTLTADGNGAVFDVPAEDLNTFLAGQENAANVSLEVLKELPQLQEREQSRGRFGGGRGGSGNRFSGGRGGKHGWFSNGSGGGRGRGNRGGKRW 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1303 705 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 99 525 - -
Glsi12g1303 705 Pfam Helicase conserved C-terminal domain 377 472 IPR001650 -
Glsi12g1303 705 CDD DEADc 138 335 - -
Glsi12g1303 705 SUPERFAMILY RNA-binding domain, RBD 565 648 IPR035979 GO:0003676
Glsi12g1303 705 Coils Coil 104 124 - -
Glsi12g1303 705 CDD SF2_C_DEAD 355 481 - -
Glsi12g1303 705 SMART ultradead3 146 358 IPR014001 -
Glsi12g1303 705 CDD GUCT_RH7_like 568 653 - -
Glsi12g1303 705 Pfam DEAD/DEAH box helicase 151 328 IPR011545 GO:0003676|GO:0005524
Glsi12g1303 705 SMART helicmild6 391 472 IPR001650 -
Glsi12g1303 705 MobiDBLite consensus disorder prediction 67 116 - -
Glsi12g1303 705 Gene3D - 73 340 IPR027417 -
Glsi12g1303 705 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 205 484 IPR027417 -
Glsi12g1303 705 FunFam DEAD-box ATP-dependent RNA helicase 7 578 650 - -
Glsi12g1303 705 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 369 511 IPR001650 -
Glsi12g1303 705 Gene3D - 580 651 - -
Glsi12g1303 705 MobiDBLite consensus disorder prediction 657 705 - -
Glsi12g1303 705 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 284 292 IPR000629 -
Glsi12g1303 705 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 158 340 IPR014001 -
Glsi12g1303 705 MobiDBLite consensus disorder prediction 1 119 - -
Glsi12g1303 705 MobiDBLite consensus disorder prediction 12 60 - -
Glsi12g1303 705 Pfam GUCT (NUC152) domain 561 656 IPR012562 GO:0003723|GO:0004386|GO:0005524
Glsi12g1303 705 Gene3D - 352 579 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1303 Glsi-ChrGlsi12 30572084 30577096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1303 164 511 Eukaryotic Initiation Factors Gene Family AT1G72730 30.595 1.55e-40 152