Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1297 ATGCAAAGTGCTCTTGCGGGGTCCACTGCAGTCGTGGCAATACTGACACCTAAACACATAGTAGTGGCCAATTGTGGTGACTCACGTGCCGTTCTATGCCGCAATGGCAAGACCATTCCTCTCTCACTTGATCACAAGCCTAATAGAGGAGACGAGCAGAGGAGGATCTTTGCAGCAGGTGGTCACTTGGTGCATCAAAATGGCATATTGAGGGTGGAGGGAGTTCTAAATATTACGCGATCAATAGGGGACTCTCTGTTGAAACCAATAATAATATCGCAACCAGAAGTTTGTATCACAAGAAGAGATGACGAAGACGAGTGCTTGATTGTTGCTAGTGATGGGCTTTGGGATGTTATATCTAATGACGTTGCTTGTGAAGTAGCCAGGACATGTCTTAGAAATGAAAGTGTGGGTGCAACTCCTGGAAGCAACTTTTTTGGTGATCCAGTAACGTCTACGAGTGATCTTGCGGCTGCAATGTTATGCCGCCTTGCACTAGGGCGACGCACTTCTGACAATGTTACTGTTATTGTTGTTGATTTGAAGAGTTGA 555 0.4577 MQSALAGSTAVVAILTPKHIVVANCGDSRAVLCRNGKTIPLSLDHKPNRGDEQRRIFAAGGHLVHQNGILRVEGVLNITRSIGDSLLKPIIISQPEVCITRRDDEDECLIVASDGLWDVISNDVACEVARTCLRNESVGATPGSNFFGDPVTSTSDLAAAMLCRLALGRRTSDNVTVIVVDLKS 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1297 184 ProSiteProfiles PPM-type phosphatase domain profile. 1 182 IPR001932 -
Glsi12g1297 184 Gene3D - 1 184 IPR036457 -
Glsi12g1297 184 PANTHER PROTEIN PHOSPHATASE 4 182 IPR015655 GO:0004722|GO:0006470
Glsi12g1297 184 SMART PP2C_4 1 180 IPR001932 -
Glsi12g1297 184 Pfam Protein phosphatase 2C 6 175 IPR001932 -
Glsi12g1297 184 CDD PP2Cc 2 182 IPR001932 -
Glsi12g1297 184 SUPERFAMILY PP2C-like 4 183 IPR036457 -
Glsi12g1297 184 FunFam Protein phosphatase 2C 50 2 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1297 Glsi-ChrGlsi12 30549849 30550618 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1297 2 184 PP2C-type Phosphatase Gene Family AT5G51760 54.404 2.84e-63 198