Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1295 ATGCCATCTCGGCAACTCTCCATATCGCCACCGTCTACGGTTGTCTTGGACCCATACCCGCCCACTCCTTCTCCCAGTCAACGCCACCACTATAAAAGCCACCACCTTTTGCCTTCTCTTCTTTCTTCCACCGCCTCTGCTTGCTCCCTCTTCCTTCTCGTCTGCCTCTGTTTTCGCAGGCTCACAAGGAAACGCACCGCCCCTTCTTCTGATTCCGAGTCCAAGCCTCCTTATCGTTTCTCGTATTCCCTTCTTCGCCGCGCCACTTCCTCCTTCTCCGCCCGCCTCGGCCATGGCGGCTTCGGCCCTGTCTACTCTGGCACTCTTCCTTCGACCAGACAGCCCATCGCCGTCAAGCTCATGGACTCTGCCTCTCTTCAGGGCGAGCGCGAGTTCCACAACGAGCTTTTTTTCGCCTCCAGGCTTCGTTCTCTATACGTTGTCTCGGCCATCGGCTTTTCCTCTGATAGTAAGCGCCGTAGATTTTTGCTCGTCTATGAACTGATGCACAATGGGAATCTCCAAGACGCACTCTTGCACCGCAAGTGCCCTGAGCTCTCTGATTGGAAGAAGCGTTTCGCCGTTATCATTGACATAGCCAAAGGACTTCAGTATCTTCACTCTTGCGACCCACCTGTAATTCATAGCGATATCAAGCCGAGTAATATTCTGTTGGACCGTCATTTATCAGCCAAAATTGGGGATTTTGGGCTTGCTCGGTTGAAATCGGAATCCCAGTTTGAAGTTGGGATTTTGGCCGTTGAAGGTGTGGGGAAGACGAATGGGGGATTGGACTTGGAGGACAAGAAGAGAAAGGAAGAGTTAGAGAGTAATGGTGGGGTTGGAATTGATGATGGTGGGTCACTGGTTGAGGAAACAGAGAGCGCGAATACTGGTGAGGGCAGCTTAGAAGTGGAGCAATCACCCGAAGGTTTTGTCAGGGTGCCTATATCAGAGACATCGCCGGAGACAATTGAGGCGGCGACGGCCTCCCCCGAGACAGCTGTGGTGGCCATGGCGGCATCAACTTCGGAGGTGAATTTCGACAAGGGTAGCATTCAGAGTGAGAAAGGCATTCTTGGGGCTGCTAAGCAAAATGGCAAAGGGTTAAAGAGCAATTCAGTGAAGGATTGGTGGTGGAAGCAAGATAATGAGGCAGTGGCTGAGAATAAGAAAGTAAAGGATTATGTGATGGAGTGGCTTGGAAAGGAGATAAACAAGGAAAGACCAAAGAGCGAATGGGGAGCGGCTACCTCCATTAGTGTAGCAACAAAGGGAACGACTGAGAAAAAGAAGAGCAAGAAGCGATTGGAGTGGTGGGCATCAATGGATGAGGAAAACAATGCTAAAATTTTGAAGAAGAAGAGAAGGCCTGCGAGGGAATGGTGGAAGGAGGAGTATTGCGAAGAGCTTGCAAAGAAGAAGAAAAAGAAAAAACAGAAGCAGAGTAAGGGAGTAAATAGTGACGACAATGGCAATGATTGGTGGGTAAGCGAGAATGATTTGTATGGGGAGAGAAAGAAGACCAAAAACCGGCGCGGGAATAGTCGTGGAAGTATGGATTGGTGGTTAGATGGTTTTAGCGGTGAGCTATGGAGAGCTCGCCTGAATAGCCATGATTCTGCCAGCGGAGAAATTCCCAAGAGTGGTGGTATTAGTAGTACCCCAAGTATGAGGGGAACCGTTTGTTATGTTGCTCCTGAGTATGGTTTTGGCGAAGATGTATCAGAGAAGTGTGATGTTTATAGTTTTGGGGTTCTATTGCTTGTTATCATTTCTGGGCGACGCCCACTTCAGGTGACTGGTTCACCATTATCAGAGTTTCATCGAGCAAATCTATTGTCTTGGGCACGCAATTGTGCACGCAATGGGAAGCTGCTTGATCTGGTTGATCAGTCCATTCAGTCATTGGATAAAGAACAAGCTCTTCTCTGCATCACGATTGCTCTGCTTTGTCTGCTCAAGTCACCTTCTCGTCGTCCTTCAATGAAAGAGGTTGTGGGAATGCTTAGTGGTGAGTTGGAGCCACCCCAATTGCCGGTTGAGTATTCACCGTCGCCCCCATCTCGCTTCCCATTCAAGTCTCGGAAGAAAGGCCGGTGA 2103 0.496 MPSRQLSISPPSTVVLDPYPPTPSPSQRHHYKSHHLLPSLLSSTASACSLFLLVCLCFRRLTRKRTAPSSDSESKPPYRFSYSLLRRATSSFSARLGHGGFGPVYSGTLPSTRQPIAVKLMDSASLQGEREFHNELFFASRLRSLYVVSAIGFSSDSKRRRFLLVYELMHNGNLQDALLHRKCPELSDWKKRFAVIIDIAKGLQYLHSCDPPVIHSDIKPSNILLDRHLSAKIGDFGLARLKSESQFEVGILAVEGVGKTNGGLDLEDKKRKEELESNGGVGIDDGGSLVEETESANTGEGSLEVEQSPEGFVRVPISETSPETIEAATASPETAVVAMAASTSEVNFDKGSIQSEKGILGAAKQNGKGLKSNSVKDWWWKQDNEAVAENKKVKDYVMEWLGKEINKERPKSEWGAATSISVATKGTTEKKKSKKRLEWWASMDEENNAKILKKKRRPAREWWKEEYCEELAKKKKKKKQKQSKGVNSDDNGNDWWVSENDLYGERKKTKNRRGNSRGSMDWWLDGFSGELWRARLNSHDSASGEIPKSGGISSTPSMRGTVCYVAPEYGFGEDVSEKCDVYSFGVLLLVIISGRRPLQVTGSPLSEFHRANLLSWARNCARNGKLLDLVDQSIQSLDKEQALLCITIALLCLLKSPSRRPSMKEVVGMLSGELEPPQLPVEYSPSPPSRFPFKSRKKGR 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1295 700 SUPERFAMILY Protein kinase-like (PK-like) 69 691 IPR011009 -
Glsi12g1295 700 Coils Coil 464 484 - -
Glsi12g1295 700 FunFam Os07g0541700 protein 169 255 - -
Glsi12g1295 700 MobiDBLite consensus disorder prediction 675 700 - -
Glsi12g1295 700 ProSiteProfiles Protein kinase domain profile. 90 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1295 700 PANTHER OS07G0586332 PROTEIN 1 699 IPR044576 -
Glsi12g1295 700 Pfam Protein kinase domain 94 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1295 700 Pfam Protein tyrosine and serine/threonine kinase 557 669 IPR001245 GO:0004672|GO:0006468
Glsi12g1295 700 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Glsi12g1295 700 SMART serkin_6 90 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1295 700 MobiDBLite consensus disorder prediction 1 30 - -
Glsi12g1295 700 Gene3D Transferase(Phosphotransferase) domain 1 534 677 - -
Glsi12g1295 700 Gene3D Transferase(Phosphotransferase) domain 1 77 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1295 Glsi-ChrGlsi12 30537920 30540022 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1295 548 667 Receptor kinase-like Gene Family AT3G58690 34.400 4.22e-11 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Glsi12g1295 Pkinase 2.3e-26 CL0016