LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi12g1294	ATGTTTCCTTTACAAGGAGGCAATGAGCTGGTGATCCAGTTTTCTAATAGTTCCACTCCCACCCAGCAGCAACACAAGATCTCAGAAGATATTCTTATGCTGGATGATTATGCTTTTCCCCACGTCAGTGATTCTGATAAAAAGTTTGGTAACGCCCGAAGGAAGAAACCATTTCATGGGTCTGATAAGAAGCTTGATAATTCTAACGTGTACAAGAAGAAGATGATTCATAGGGAGATTGAGAGGCAAAGGAGGCAAGAAATGGCTACCCTTTATGCCTCTCTTAGATCCCTTCTCCCTCTTGAGTACATCAAGGGAAAACGTTCGATATCAGATCACATGAATGAGGCAGTGAACTATATAAAGCAGCTGCAGAAGAATATCAAAGAACTTGGTGCCAAGAGAGATGAACTGAAGAAAATCTCCAATTTCAACTTGGAAAACCATGAGAGCCAACGCATAACCAGAAGCTTTACTGTTCATGAGAATAATGGTGCTGTGGCAATTGAAATTACCAGCGACTTCAGAGAGGAAAAGCTTTCCCTTTCAGTATTGCTGCAACTACTGCTTGATGAAGGACTTGAAGTTATTAGTTGTCTTTCCACCCAAGTCAATGGTAGAATACTTCATAGTGTGCAGTGTGAGGTTAACAATTCCAACAGTGTAGATCTGGCTCAGCTGAGAAGCAAAGTTGCATATATGATTTCATCATATAGATGTTCATGTTATGATTAA	735	0.4027	MFPLQGGNELVIQFSNSSTPTQQQHKISEDILMLDDYAFPHVSDSDKKFGNARRKKPFHGSDKKLDNSNVYKKKMIHREIERQRRQEMATLYASLRSLLPLEYIKGKRSISDHMNEAVNYIKQLQKNIKELGAKRDELKKISNFNLENHESQRITRSFTVHENNGAVAIEITSDFREEKLSLSVLLQLLLDEGLEVISCLSTQVNGRILHSVQCEVNNSNSVDLAQLRSKVAYMISSYRCSCYD	244

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi12g1294	244	CDD	bHLH_AtORG2_like	73	143	-	-
	Glsi12g1294	244	PANTHER	ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED	56	223	-	-
	Glsi12g1294	244	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	72	140	IPR036638	GO:0046983
	Glsi12g1294	244	Coils	Coil	114	141	-	-
	Glsi12g1294	244	SMART	finulus	78	130	IPR011598	GO:0046983
	Glsi12g1294	244	FunFam	Transcription factor bHLH126	64	152	-	-
	Glsi12g1294	244	Pfam	Helix-loop-helix DNA-binding domain	73	125	IPR011598	GO:0046983
	Glsi12g1294	244	Gene3D	-	65	155	IPR036638	GO:0046983
	Glsi12g1294	244	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	72	124	IPR011598	GO:0046983

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi12g1294	Glsi-ChrGlsi12	30533317	30534353	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi12g1294	77	232	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT4G25410	42.771	7.44e-39	132

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Glsi12g1294		HLH	9e-11	No_clan

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