Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1294 ATGTTTCCTTTACAAGGAGGCAATGAGCTGGTGATCCAGTTTTCTAATAGTTCCACTCCCACCCAGCAGCAACACAAGATCTCAGAAGATATTCTTATGCTGGATGATTATGCTTTTCCCCACGTCAGTGATTCTGATAAAAAGTTTGGTAACGCCCGAAGGAAGAAACCATTTCATGGGTCTGATAAGAAGCTTGATAATTCTAACGTGTACAAGAAGAAGATGATTCATAGGGAGATTGAGAGGCAAAGGAGGCAAGAAATGGCTACCCTTTATGCCTCTCTTAGATCCCTTCTCCCTCTTGAGTACATCAAGGGAAAACGTTCGATATCAGATCACATGAATGAGGCAGTGAACTATATAAAGCAGCTGCAGAAGAATATCAAAGAACTTGGTGCCAAGAGAGATGAACTGAAGAAAATCTCCAATTTCAACTTGGAAAACCATGAGAGCCAACGCATAACCAGAAGCTTTACTGTTCATGAGAATAATGGTGCTGTGGCAATTGAAATTACCAGCGACTTCAGAGAGGAAAAGCTTTCCCTTTCAGTATTGCTGCAACTACTGCTTGATGAAGGACTTGAAGTTATTAGTTGTCTTTCCACCCAAGTCAATGGTAGAATACTTCATAGTGTGCAGTGTGAGGTTAACAATTCCAACAGTGTAGATCTGGCTCAGCTGAGAAGCAAAGTTGCATATATGATTTCATCATATAGATGTTCATGTTATGATTAA 735 0.4027 MFPLQGGNELVIQFSNSSTPTQQQHKISEDILMLDDYAFPHVSDSDKKFGNARRKKPFHGSDKKLDNSNVYKKKMIHREIERQRRQEMATLYASLRSLLPLEYIKGKRSISDHMNEAVNYIKQLQKNIKELGAKRDELKKISNFNLENHESQRITRSFTVHENNGAVAIEITSDFREEKLSLSVLLQLLLDEGLEVISCLSTQVNGRILHSVQCEVNNSNSVDLAQLRSKVAYMISSYRCSCYD 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1294 244 CDD bHLH_AtORG2_like 73 143 - -
Glsi12g1294 244 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 56 223 - -
Glsi12g1294 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 140 IPR036638 GO:0046983
Glsi12g1294 244 Coils Coil 114 141 - -
Glsi12g1294 244 SMART finulus 78 130 IPR011598 GO:0046983
Glsi12g1294 244 FunFam Transcription factor bHLH126 64 152 - -
Glsi12g1294 244 Pfam Helix-loop-helix DNA-binding domain 73 125 IPR011598 GO:0046983
Glsi12g1294 244 Gene3D - 65 155 IPR036638 GO:0046983
Glsi12g1294 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 72 124 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1294 Glsi-ChrGlsi12 30533317 30534353 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1294 77 232 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 42.771 7.44e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi12g1294 HLH 9e-11 No_clan