Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1293 ATGCTGCCATCTACCCAAAAAGATGGGAAGCTTCATAGCAATAAACTGCCCAAGGGCCGGAAGCAGAATCCACCCGCCTTGCACGAAGAAGATGATGATGTTCAGAAGAAGCTGATGCATAGGGACATAGAAAGACAAAGGAGGCAAGAAATGACCACCCTTTATGCCTCCCTTAGATCTCTACTCCCTCTTGAATACATCAAGGGAAAGCGCTCGATATCAGATCATATGAACGAGGCTGTCAAATATATCAAATTCCTACAGAATAGGATAAAGGAATTAGATGTCAAGAGGGATAAACTAAGGAAGCTGTCTAATTTGAATGATGTTGACCCTGAAATTAGAAGCTCAACTAGTTGTGCTGACCCACCAACAAATGTTACTGTCCGTCATTGTTTGGGTGGGGTTGAAGTTGTGTTCAGTAGTAGCCTCACGGCTCAAATGCTGCCTCTATCAAGACTAGTGGATATGCTGCATAAGGATGGGTTTACTATTGCTAACTGTATTTACACCAAAGTCGAACAAAGGCTCATATACAGCATCCACTTAGAGGTTAATTCTGACCCTACCAGCATTGACCCTTCTGTGCTGAAAAGAAAACTGACAGAATTAGCAACTCCGTCATCAAGTGTTAGATTTGATATAGAGAAGTTTGATGGAAAAATCAATTTTGGCTTGTGGCAAGTGCAAGTCAAAGATGTATTGATCCAATCTGGGTTATACAAGGCTTTGAAGGAGAAACCATCCCCTGATCCTAGCAAAGATACTACAAAGATGGAAGAAGCTTGGGAGGATCTTGATTTGAGGGCAGCAAGTGCAATTCGATTGAGTTTGGCTAAAAATGTTCTTGCAAATGTGCAAGGAATATTTACTGCCAAAGAGCTATGGGAGAAGCTTGAAGAATTGTATCAAGCCAAAGGTGTCTCAAATCGTGTGTACTTGAAGGAGCAATTTCATACACTGCATATGAATGAAGGTACAACAATTTCAGACCATCTAAGTGTTCTAAACGGGATTGTTTCTGAATTAGAGACAATCGGAGTTAAAATTGATGATGAAGATATGGCTTTACGGCTTATTTGGTCTCTTCCAACATCCTATGAACACATGAAGCCTATTTTGATTCATGGGAAGGAGAAGATAATTTTTTCTGAAGTTACTGGAAAACTTTTTTCTGAAGAAAAGAGGCTCAGTAGTGGAAAAAACATTCCTCATGATGGCTCAGCTTTGCTTGCTGAAAATTGGAAGAAAAATGCCTTTAAAAGGAAGACAGTAGTATGTTGGAGGTGTGGGCAATCTGGACACCTTAAAAGACATTGTCCAAAAGATGGTGGAGCTGTTTCGACAAGTGGCTCAAAATTGAATTCTGATGGTGATGCTAACATAGTTTTATTGCTGATGAAGTTACAAGATTCTGATTATCATCTTATACGTTCCTCACGCCAAGAAATGACCTTGAAATGTTTATGTTGTTTCCTCCCTCAAGAAGAGAGTATCAAAACAAGAAGCGTGAGCAAGGGTGGAGACTATCCATGGGAATTGTACACCCTGAAGGAGTTGCTTCGGGCAACCAACAATTTTCATCAAGATAACAAGATTGGAGAGGGTGGATTTGGAAGTGTTTATTGGGGTCGAACAAGTAAAGGCATCGAGATCGCAGTGAAGCGCCTGAAGACCATGACTGCAAAGGCAGAGATGGAATTTGCAGTTGAAGTAGAAGTACTTGGGAGGGTGAGGCATAAGAACCTGTTGGGATTAAGGGGATTCTATGCAGGTGGGGACGAAAGGTTGATTGTGTATGATTACATGCCTAATCATAGCTTGCTCACCCATTTGCATGGTCCACTCGCTTCAAACTGTCAGCTAGATTGGCCTAAAAGAATGAGCATAGCAATTGGAGCAGCTGAAGGTTTGGCGTATTTGCACCATGAAGCAAATCCTCACATCATACATAGAGATATAAAGGCAAGCAATGTTCTTTTAGACACCGAGTTTCAAGCTAAGGTGGCTGATTTTGGTTTTGCAAAGCTACTACCAGAGGGTGTAAGCCATCTCACGACAAGGGTTAAAGGAACCCTAGGATATTTGGCGCCTGAATATGCCATGTGGGGAAAAGTTTCTGAAAGCTGCGATGTGTATAGCTTTGGGATTTTGCTTTTGGAGATCGTTAGTGCAAAGAAACCTATAGAGAAACTATCAGGAGGAGTGAAAAGGGATATTGTTCAATGGGTGACACCGTATGCCCAGAAGGGAATATTCAACCATATTGCAGATCCAAAGTTGAAGGGGAAGTATGATATGGAGCAGTTGAAATCAGTGGTGATGATAGCCATGAAATGTACGGATAGTAGTCCGGAGAAGAGGCCTAGCATGGAGGAGGTGGTGGAGTGGCTCAAGGCCGGTGGGATTGGGAGGAGAAGAAAATTAGAGATTCCAAGTTTGAGTCACAACAATGGAGATGAAGAAAAGGACCGAAATGATACCGACTATGATGAGATGGGAAAGAAGTTTTCCAAGTTGAGAATACCAACTGGTAGTTATAAAATAAGATAA 2553 0.416 MLPSTQKDGKLHSNKLPKGRKQNPPALHEEDDDVQKKLMHRDIERQRRQEMTTLYASLRSLLPLEYIKGKRSISDHMNEAVKYIKFLQNRIKELDVKRDKLRKLSNLNDVDPEIRSSTSCADPPTNVTVRHCLGGVEVVFSSSLTAQMLPLSRLVDMLHKDGFTIANCIYTKVEQRLIYSIHLEVNSDPTSIDPSVLKRKLTELATPSSSVRFDIEKFDGKINFGLWQVQVKDVLIQSGLYKALKEKPSPDPSKDTTKMEEAWEDLDLRAASAIRLSLAKNVLANVQGIFTAKELWEKLEELYQAKGVSNRVYLKEQFHTLHMNEGTTISDHLSVLNGIVSELETIGVKIDDEDMALRLIWSLPTSYEHMKPILIHGKEKIIFSEVTGKLFSEEKRLSSGKNIPHDGSALLAENWKKNAFKRKTVVCWRCGQSGHLKRHCPKDGGAVSTSGSKLNSDGDANIVLLLMKLQDSDYHLIRSSRQEMTLKCLCCFLPQEESIKTRSVSKGGDYPWELYTLKELLRATNNFHQDNKIGEGGFGSVYWGRTSKGIEIAVKRLKTMTAKAEMEFAVEVEVLGRVRHKNLLGLRGFYAGGDERLIVYDYMPNHSLLTHLHGPLASNCQLDWPKRMSIAIGAAEGLAYLHHEANPHIIHRDIKASNVLLDTEFQAKVADFGFAKLLPEGVSHLTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLEIVSAKKPIEKLSGGVKRDIVQWVTPYAQKGIFNHIADPKLKGKYDMEQLKSVVMIAMKCTDSSPEKRPSMEEVVEWLKAGGIGRRRKLEIPSLSHNNGDEEKDRNDTDYDEMGKKFSKLRIPTGSYKIR 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1293 850 MobiDBLite consensus disorder prediction 809 835 - -
Glsi12g1293 850 Pfam Helix-loop-helix DNA-binding domain 36 88 IPR011598 GO:0046983
Glsi12g1293 850 FunFam PTI1-like tyrosine-protein kinase At3g15890 603 814 - -
Glsi12g1293 850 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 33 102 IPR036638 GO:0046983
Glsi12g1293 850 Gene3D - 421 463 - -
Glsi12g1293 850 Gene3D Phosphorylase Kinase; domain 1 494 602 - -
Glsi12g1293 850 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 35 87 IPR011598 GO:0046983
Glsi12g1293 850 ProSitePatterns Protein kinases ATP-binding region signature. 533 555 IPR017441 GO:0005524
Glsi12g1293 850 Gene3D - 27 113 IPR036638 GO:0046983
Glsi12g1293 850 Pfam gag-polypeptide of LTR copia-type 263 398 - -
Glsi12g1293 850 FunFam Transcription factor bHLH126 27 114 - -
Glsi12g1293 850 Pfam Zinc knuckle 426 442 IPR001878 GO:0003676|GO:0008270
Glsi12g1293 850 CDD bHLH_AtORG2_like 36 111 - -
Glsi12g1293 850 Coils Coil 77 104 - -
Glsi12g1293 850 Gene3D Transferase(Phosphotransferase) domain 1 603 806 - -
Glsi12g1293 850 SUPERFAMILY Retrovirus zinc finger-like domains 417 445 IPR036875 GO:0003676|GO:0008270
Glsi12g1293 850 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 197 800 - -
Glsi12g1293 850 SUPERFAMILY Protein kinase-like (PK-like) 509 809 IPR011009 -
Glsi12g1293 850 SMART c2hcfinal6 426 442 IPR001878 GO:0003676|GO:0008270
Glsi12g1293 850 ProSiteProfiles Protein kinase domain profile. 527 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1293 850 ProSitePatterns Serine/Threonine protein kinases active-site signature. 649 661 IPR008271 GO:0004672|GO:0006468
Glsi12g1293 850 FunFam PTI1-like tyrosine-protein kinase At3g15890 499 602 - -
Glsi12g1293 850 SMART finulus 41 93 IPR011598 GO:0046983
Glsi12g1293 850 SMART serkin_6 527 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g1293 850 ProSiteProfiles Zinc finger CCHC-type profile. 427 442 IPR001878 GO:0003676|GO:0008270
Glsi12g1293 850 MobiDBLite consensus disorder prediction 1 35 - -
Glsi12g1293 850 Pfam Protein kinase domain 527 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1293 Glsi-ChrGlsi12 30517299 30527333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1293 494 828 Receptor kinase-like Gene Family AT4G02010 42.197 9.54e-81 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Glsi12g1293 Pkinase 5.8e-45 CL0016
TF bHLH Glsi12g1293 Pkinase 5.8e-45 CL0016