Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Glsi12g1286 | ATGGGAAGAGGAAGGGTGGTTCTGGAGAGAATAGAAAACAAGATCAACCGCCAAGTGACCTTCTCAAAGCGCAGGAATGGTTTGCTGAAGAAAGCCTACGAGCTTTCTGTGCTGTGCGACGCTGAAGTCGCCCTTATTATCTTTTCCAGCCGTGGCAAGCTTTTCCAGTACAGCAGCTCTGAGATAAACAGAACCATTGAGCGGTATCGCCAATGCTGTTACATCGCTCAGGCTTGCAACTTAGCTGAACGTGAATCACAGAATCTATATCCGGAGCTTTTGAAATTAAAAATGAAACATGAATCCCTCGAGAGGACACAAAGGCAATTGCTAGGAGAAGATCTTAACCCCCTTGACATAAAAGAATTGCAGAATCTTGAGAAACAACTGGAGAAAACGCTCACACAAGCGCGACAATGCAAGACACAGAAGATGATGGAACGAGTGGATGAGTTACACCAAAAGGGGCACAACCTGGAGGAGCTTAACAAACAACTCAAGTCCAAGCTTGAGGAAATATATGAATGTAGCCAAATTACTATTGAAGATCATGAACCCAACCAATTCGAATTAGGACCAAGTCGGGACACCTCGCAAATTGGGCAGGGGCAGCAAGGTAGTTCAAAAGGAAAAGCAGTAGAGAGGAGCTGGACAGAGGGAGAACAAAGCAGTCATAATAACTACAATGGATGGCTGCTTTGA | 702 | 0.4501 | MGRGRVVLERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLFQYSSSEINRTIERYRQCCYIAQACNLAERESQNLYPELLKLKMKHESLERTQRQLLGEDLNPLDIKELQNLEKQLEKTLTQARQCKTQKMMERVDELHQKGHNLEELNKQLKSKLEEIYECSQITIEDHEPNQFELGPSRDTSQIGQGQQGSSKGKAVERSWTEGEQSSHNNYNGWLL | 233 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Glsi12g1286 | 233 | FunFam | MADS-box transcription factor 1 | 13 | 84 | - | - | |
Glsi12g1286 | 233 | Coils | Coil | 149 | 172 | - | - | |
Glsi12g1286 | 233 | Pfam | K-box region | 83 | 170 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Glsi12g1286 | 233 | SUPERFAMILY | SRF-like | 2 | 87 | IPR036879 | GO:0003677|GO:0046983 | |
Glsi12g1286 | 233 | MobiDBLite | consensus disorder prediction | 191 | 233 | - | - | |
Glsi12g1286 | 233 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Glsi12g1286 | 233 | Coils | Coil | 120 | 143 | - | - | |
Glsi12g1286 | 233 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Glsi12g1286 | 233 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Glsi12g1286 | 233 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Glsi12g1286 | 233 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Glsi12g1286 | 233 | Gene3D | - | 13 | 73 | IPR036879 | GO:0003677|GO:0046983 | |
Glsi12g1286 | 233 | ProSiteProfiles | K-box domain profile. | 86 | 176 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Glsi12g1286 | 233 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Glsi12g1286 | 233 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Glsi12g1286 | 233 | MobiDBLite | consensus disorder prediction | 187 | 233 | - | - | |
Glsi12g1286 | 233 | CDD | MADS_MEF2_like | 2 | 72 | IPR033896 | GO:0000977|GO:0045944 | |
Glsi12g1286 | 233 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 3 | 194 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Glsi12g1286 | Glsi-ChrGlsi12 | 30452798 | 30458144 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Glsi12g1286 | 1 | 233 | MADS-box Gene Family | AT2G45650 | 49.805 | 1.48e-66 | 204 |