Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g1286 ATGGGAAGAGGAAGGGTGGTTCTGGAGAGAATAGAAAACAAGATCAACCGCCAAGTGACCTTCTCAAAGCGCAGGAATGGTTTGCTGAAGAAAGCCTACGAGCTTTCTGTGCTGTGCGACGCTGAAGTCGCCCTTATTATCTTTTCCAGCCGTGGCAAGCTTTTCCAGTACAGCAGCTCTGAGATAAACAGAACCATTGAGCGGTATCGCCAATGCTGTTACATCGCTCAGGCTTGCAACTTAGCTGAACGTGAATCACAGAATCTATATCCGGAGCTTTTGAAATTAAAAATGAAACATGAATCCCTCGAGAGGACACAAAGGCAATTGCTAGGAGAAGATCTTAACCCCCTTGACATAAAAGAATTGCAGAATCTTGAGAAACAACTGGAGAAAACGCTCACACAAGCGCGACAATGCAAGACACAGAAGATGATGGAACGAGTGGATGAGTTACACCAAAAGGGGCACAACCTGGAGGAGCTTAACAAACAACTCAAGTCCAAGCTTGAGGAAATATATGAATGTAGCCAAATTACTATTGAAGATCATGAACCCAACCAATTCGAATTAGGACCAAGTCGGGACACCTCGCAAATTGGGCAGGGGCAGCAAGGTAGTTCAAAAGGAAAAGCAGTAGAGAGGAGCTGGACAGAGGGAGAACAAAGCAGTCATAATAACTACAATGGATGGCTGCTTTGA 702 0.4501 MGRGRVVLERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLFQYSSSEINRTIERYRQCCYIAQACNLAERESQNLYPELLKLKMKHESLERTQRQLLGEDLNPLDIKELQNLEKQLEKTLTQARQCKTQKMMERVDELHQKGHNLEELNKQLKSKLEEIYECSQITIEDHEPNQFELGPSRDTSQIGQGQQGSSKGKAVERSWTEGEQSSHNNYNGWLL 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g1286 233 FunFam MADS-box transcription factor 1 13 84 - -
Glsi12g1286 233 Coils Coil 149 172 - -
Glsi12g1286 233 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi12g1286 233 SUPERFAMILY SRF-like 2 87 IPR036879 GO:0003677|GO:0046983
Glsi12g1286 233 MobiDBLite consensus disorder prediction 191 233 - -
Glsi12g1286 233 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Glsi12g1286 233 Coils Coil 120 143 - -
Glsi12g1286 233 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Glsi12g1286 233 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Glsi12g1286 233 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Glsi12g1286 233 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Glsi12g1286 233 Gene3D - 13 73 IPR036879 GO:0003677|GO:0046983
Glsi12g1286 233 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi12g1286 233 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Glsi12g1286 233 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Glsi12g1286 233 MobiDBLite consensus disorder prediction 187 233 - -
Glsi12g1286 233 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Glsi12g1286 233 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g1286 Glsi-ChrGlsi12 30452798 30458144 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g1286 1 233 MADS-box Gene Family AT2G45650 49.805 1.48e-66 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Glsi12g1286 K-box 3.2e-22 No_clan